Analysis of interatomic Contacts of Structural Units in PDB entry:
2E84


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2E84 entry

There is 1 chain in PDB entry 2E84 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 32ALA 555
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 2E84. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 38Right-handed 310
Helix 2
2
A
49 55Right-handed 310
Helix 3
3
A
66 77Right-handed alpha
Helix 4
4
A
106 128Right-handed alpha
Helix 5
5
A
138 143Right-handed alpha
Helix 6
6
A
158 167Right-handed alpha
Helix 7
7
A
180 184Right-handed 310
Helix 8
8
A
204 208Right-handed 310
Helix 9
9
A
219 238Right-handed alpha
Helix 10
10
A
248 254Right-handed alpha
Helix 11
11
A
254 259Right-handed alpha
Helix 12
12
A
306 312Right-handed alpha
Helix 13
13
A
326 330Right-handed 310
Helix 14
14
A
336 340Right-handed 310
Helix 15
15
A
343 350Right-handed alpha
Helix 16
16
A
356 365Right-handed alpha
Helix 17
17
A
367 378Right-handed alpha
Helix 18
18
A
388 393Right-handed alpha
Helix 19
19
A
400 406Right-handed alpha
Helix 20
20
A
413 428Right-handed alpha
Helix 21
21
A
436 440Right-handed 310
Helix 22
22
A
459 472Right-handed alpha
Helix 23
23
A
474 481Right-handed alpha
Helix 24
24
A
485 491Right-handed 310
Helix 25
25
A
503 507Right-handed 310
Helix 26
26
A
521 538Right-handed alpha
Helix 27
27
A
546 550Right-handed 310
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There are 5 sheets in PDB entry 2E84. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 42first strand
Strand 2
A
149 150parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 48first strand
Strand 2
A
62 65anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
195 196anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 280first strand
Strand 2
A
302 305anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 446first strand
Strand 2
A
456 458anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il