Analysis of interatomic Contacts of Structural Units in PDB entry:
2E8D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2E8D entry

There are 4 chains in PDB entry 2E8D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1LYS 22
B
 SER 23LYS 44
C
 SER 45LYS 66
D
 SER 67LYS 88
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 2E8D

There are 2 sheets in PDB entry 2E8D. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 8first strand
Strand 2
B
25 30parallel
Strand 3
C
47 52parallel
Strand 4
D
69 74parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 20first strand
Strand 2
B
37 42parallel
Strand 3
C
59 64parallel
Strand 4
D
81 86parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il