Analysis of interatomic Contacts of Structural Units in PDB entry:
2E8G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2E8G entry

There are 2 chains in PDB entry 2E8G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 240
B
 MET 1LYS 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 2E8G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 6Right-handed 310
Helix 2
2
A
7 26Right-handed alpha
Helix 3
3
A
34 54Right-handed alpha
Helix 4
4
A
58 63Right-handed alpha
Helix 5
5
A
65 83Right-handed alpha
Helix 6
6
A
86 94Right-handed alpha
Helix 7
7
A
98 119Right-handed alpha
Helix 8
8
A
119 125Right-handed alpha
Helix 9
9
A
131 136Right-handed 310
Helix 10
10
A
224 227Right-handed 310
Helix 11
11
A
228 240Right-handed alpha
Helix 12
12
B
3 6Right-handed 310
Helix 13
13
B
7 26Right-handed alpha
Helix 14
14
B
34 54Right-handed alpha
Helix 15
15
B
58 63Right-handed alpha
Helix 16
16
B
65 82Right-handed alpha
Helix 17
17
B
86 93Right-handed alpha
Helix 18
18
B
99 119Right-handed alpha
Helix 19
19
B
119 126Right-handed alpha
Helix 20
20
B
131 136Right-handed 310
Helix 21
21
B
224 227Right-handed 310
Helix 22
22
B
228 240Right-handed alpha
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There are 5 sheets in PDB entry 2E8G. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 171first strand
Strand 2
A
156 161anti-parallel
Strand 3
A
138 148anti-parallel
Strand 4
A
181 185anti-parallel
Strand 5
A
200 201anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 192first strand
Strand 2
A
195 197anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 204first strand
Strand 2
A
207 208anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 171first strand
Strand 2
B
156 161anti-parallel
Strand 3
B
138 148anti-parallel
Strand 4
B
181 185anti-parallel
Strand 5
B
200 201anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 192first strand
Strand 2
B
195 197anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il