Analysis of interatomic Contacts of Structural Units in PDB entry:
2E8Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2E8Y entry

There are 2 chains in PDB entry 2E8Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 712
B
 MET 1SER 712
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 2E8Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 27Right-handed 310
Helix 2
2
A
89 92Right-handed 310
Helix 3
3
A
93 101Right-handed alpha
Helix 4
4
A
186 190Right-handed 310
Helix 5
5
A
211 215Right-handed 310
Helix 6
6
A
221 228Right-handed alpha
Helix 7
7
A
238 244Right-handed 310
Helix 8
8
A
255 264Right-handed alpha
Helix 9
9
A
283 287Right-handed 310
Helix 10
10
A
310 328Right-handed alpha
Helix 11
11
A
343 346Right-handed 310
Helix 12
12
A
347 353Right-handed alpha
Helix 13
13
A
380 399Right-handed alpha
Helix 14
14
A
407 411Right-handed 310
Helix 15
15
A
412 427Right-handed alpha
Helix 16
16
A
444 448Right-handed 310
Helix 17
17
A
450 457Right-handed 310
Helix 18
18
A
464 473Right-handed alpha
Helix 19
19
A
482 486Right-handed 310
Helix 20
20
A
487 489Right-handed 310
Helix 21
21
A
490 499Right-handed alpha
Helix 22
22
A
513 515Right-handed 310
Helix 23
23
A
528 537Right-handed alpha
Helix 24
24
A
541 558Right-handed alpha
Helix 25
25
A
568 572Right-handed 310
Helix 26
26
A
585 590Right-handed alpha
Helix 27
27
A
592 599Right-handed alpha
Helix 28
28
A
599 616Right-handed alpha
Helix 29
29
A
617 621Right-handed 310
Helix 30
30
A
623 630Right-handed alpha
Helix 31
31
B
25 27Right-handed 310
Helix 32
32
B
89 92Right-handed 310
Helix 33
33
B
93 101Right-handed alpha
Helix 34
34
B
186 190Right-handed 310
Helix 35
35
B
211 215Right-handed 310
Helix 36
36
B
221 228Right-handed alpha
Helix 37
37
B
238 244Right-handed 310
Helix 38
38
B
255 264Right-handed alpha
Helix 39
39
B
283 287Right-handed 310
Helix 40
40
B
310 328Right-handed alpha
Helix 41
41
B
343 346Right-handed 310
Helix 42
42
B
347 353Right-handed alpha
Helix 43
43
B
380 399Right-handed alpha
Helix 44
44
B
407 411Right-handed 310
Helix 45
45
B
412 427Right-handed alpha
Helix 46
46
B
444 448Right-handed 310
Helix 47
47
B
450 457Right-handed 310
Helix 48
48
B
464 473Right-handed alpha
Helix 49
49
B
482 486Right-handed 310
Helix 50
50
B
487 489Right-handed 310
Helix 51
51
B
490 499Right-handed alpha
Helix 52
52
B
513 515Right-handed 310
Helix 53
53
B
528 537Right-handed alpha
Helix 54
54
B
541 558Right-handed alpha
Helix 55
55
B
568 572Right-handed 310
Helix 56
56
B
585 590Right-handed alpha
Helix 57
57
B
592 599Right-handed alpha
Helix 58
58
B
599 616Right-handed alpha
Helix 59
59
B
617 620Right-handed 310
Helix 60
60
B
623 630Right-handed alpha
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There are 16 sheets in PDB entry 2E8Y. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
A
74 76anti-parallel
Strand 3
A
34 38anti-parallel
Strand 4
A
41 52anti-parallel
Strand 5
A
56 62anti-parallel
Strand 6
A
17 23anti-parallel
Strand 7
A
9 14anti-parallel
Strand 8
A
86 87parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 110first strand
Strand 2
A
114 120anti-parallel
Strand 3
A
150 156anti-parallel
Strand 4
A
144 145anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 142first strand
Strand 2
A
126 132anti-parallel
Strand 3
A
163 170anti-parallel
Strand 4
A
173 177anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 142first strand
Strand 2
A
126 132anti-parallel
Strand 3
A
163 170anti-parallel
Strand 4
A
192 193anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 220first strand
Strand 2
A
267 270parallel
Strand 3
A
331 336parallel
Strand 4
A
402 405parallel
Strand 5
A
431 434parallel
Strand 6
A
461 463parallel
Strand 7
A
517 519parallel
Strand 8
A
562 566parallel
Strand 9
A
217 220parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 276first strand
Strand 2
A
294 300anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
631 636first strand
Strand 2
A
640 645anti-parallel
Strand 3
A
656 662anti-parallel
Strand 4
A
704 710anti-parallel
Strand 5
A
678 683anti-parallel
Strand 6
A
686 694anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
667 671first strand
Strand 2
A
697 701anti-parallel
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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 14first strand
Strand 2
B
17 23anti-parallel
Strand 3
B
56 62anti-parallel
Strand 4
B
42 52anti-parallel
Strand 5
B
34 37anti-parallel
Strand 6
B
74 76anti-parallel
Strand 7
B
82 87anti-parallel
Strand 8
B
9 14parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 110first strand
Strand 2
B
114 120anti-parallel
Strand 3
B
150 156anti-parallel
Strand 4
B
144 145anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 142first strand
Strand 2
B
126 132anti-parallel
Strand 3
B
163 170anti-parallel
Strand 4
B
173 177anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 142first strand
Strand 2
B
126 132anti-parallel
Strand 3
B
163 170anti-parallel
Strand 4
B
192 193anti-parallel
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There are 9 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 220first strand
Strand 2
B
267 270parallel
Strand 3
B
331 336parallel
Strand 4
B
402 405parallel
Strand 5
B
431 434parallel
Strand 6
B
461 463parallel
Strand 7
B
517 519parallel
Strand 8
B
562 566parallel
Strand 9
B
217 220parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
274 276first strand
Strand 2
B
294 300anti-parallel
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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
631 637first strand
Strand 2
B
640 645anti-parallel
Strand 3
B
654 662anti-parallel
Strand 4
B
704 711anti-parallel
Strand 5
B
678 683anti-parallel
Strand 6
B
686 694anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
667 671first strand
Strand 2
B
697 701anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il