Analysis of interatomic Contacts of Structural Units in PDB entry:
2E9T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2E9T entry

There are 6 chains in PDB entry 2E9T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 U 903 C 910
C
 G 915 C 920
E
 U 903 C 910
F
 G 915 C 920
A
 GLY 1GLU 474
D
 GLY 1GLU 474
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 2E9T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 31Right-handed alpha
Helix 2
2
A
51 56Right-handed alpha
Helix 3
3
A
67 90Right-handed alpha
Helix 4
4
A
97 104Right-handed alpha
Helix 5
5
A
120 125Right-handed 310
Helix 6
6
A
127 131Right-handed alpha
Helix 7
7
A
140 152Right-handed alpha
Helix 8
8
A
170 176Right-handed alpha
Helix 9
9
A
185 206Right-handed alpha
Helix 10
10
A
218 232Right-handed alpha
Helix 11
11
A
249 261Right-handed alpha
Helix 12
12
A
262 266Right-handed 310
Helix 13
13
A
269 277Right-handed alpha
Helix 14
14
A
302 321Right-handed alpha
Helix 15
15
A
349 359Right-handed alpha
Helix 16
16
A
379 382Right-handed 310
Helix 17
17
A
404 413Right-handed alpha
Helix 18
18
A
419 432Right-handed alpha
Helix 19
19
A
435 444Right-handed alpha
Helix 20
20
A
445 447Right-handed 310
Helix 21
21
A
454 467Right-handed alpha
Helix 22
22
A
467 473Right-handed alpha
Helix 23
23
D
24 31Right-handed alpha
Helix 24
24
D
51 56Right-handed alpha
Helix 25
25
D
67 90Right-handed alpha
Helix 26
26
D
97 104Right-handed alpha
Helix 27
27
D
120 125Right-handed 310
Helix 28
28
D
127 130Right-handed 310
Helix 29
29
D
140 152Right-handed alpha
Helix 30
30
D
170 176Right-handed alpha
Helix 31
31
D
185 206Right-handed alpha
Helix 32
32
D
218 232Right-handed alpha
Helix 33
33
D
249 261Right-handed alpha
Helix 34
34
D
262 266Right-handed 310
Helix 35
35
D
269 277Right-handed alpha
Helix 36
36
D
302 321Right-handed alpha
Helix 37
37
D
349 359Right-handed alpha
Helix 38
38
D
379 382Right-handed 310
Helix 39
39
D
404 413Right-handed alpha
Helix 40
40
D
419 432Right-handed alpha
Helix 41
41
D
435 444Right-handed alpha
Helix 42
42
D
445 447Right-handed 310
Helix 43
43
D
454 467Right-handed alpha
Helix 44
44
D
467 473Right-handed alpha
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There are 12 sheets in PDB entry 2E9T. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 13first strand
Strand 2
A
280 293anti-parallel
Strand 3
A
159 163parallel
Strand 4
A
180 183anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
414 416anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
167 169anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 133first strand
Strand 2
A
138 139anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 336first strand
Strand 2
A
339 344anti-parallel
Strand 3
A
235 241anti-parallel
Strand 4
A
364 366anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 385first strand
Strand 2
A
388 392anti-parallel
Strand 3
A
399 402anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 13first strand
Strand 2
D
280 293anti-parallel
Strand 3
D
159 163parallel
Strand 4
D
180 183anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
21 23first strand
Strand 2
D
414 416anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
34 36first strand
Strand 2
D
167 169anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
132 133first strand
Strand 2
D
138 139anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
332 336first strand
Strand 2
D
339 344anti-parallel
Strand 3
D
235 241anti-parallel
Strand 4
D
364 366anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
384 385first strand
Strand 2
D
388 392anti-parallel
Strand 3
D
399 403anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il