Analysis of interatomic Contacts of Structural Units in PDB entry:
2EB0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2EB0 entry

There are 2 chains in PDB entry 2EB0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 307
B
 MET 1GLY 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 2EB0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 26Right-handed alpha
Helix 2
2
A
36 47Right-handed alpha
Helix 3
3
A
69 73Right-handed 310
Helix 4
4
A
76 80Right-handed 310
Helix 5
5
A
108 119Right-handed alpha
Helix 6
6
A
121 126Right-handed 310
Helix 7
7
A
133 149Right-handed alpha
Helix 8
8
A
157 172Right-handed alpha
Helix 9
9
A
175 189Right-handed alpha
Helix 10
10
A
190 193Right-handed 310
Helix 11
11
A
194 200Right-handed alpha
Helix 12
12
A
223 244Right-handed alpha
Helix 13
13
A
268 276Right-handed alpha
Helix 14
14
A
292 297Right-handed alpha
Helix 15
15
A
297 306Right-handed alpha
Helix 16
16
B
11 26Right-handed alpha
Helix 17
17
B
36 46Right-handed alpha
Helix 18
18
B
69 73Right-handed 310
Helix 19
19
B
76 80Right-handed 310
Helix 20
20
B
108 119Right-handed alpha
Helix 21
21
B
121 126Right-handed 310
Helix 22
22
B
133 149Right-handed alpha
Helix 23
23
B
157 172Right-handed alpha
Helix 24
24
B
175 189Right-handed alpha
Helix 25
25
B
190 193Right-handed 310
Helix 26
26
B
194 202Right-handed alpha
Helix 27
27
B
223 228Right-handed alpha
Helix 28
28
B
229 244Right-handed alpha
Helix 29
29
B
268 276Right-handed alpha
Helix 30
30
B
292 297Right-handed alpha
Helix 31
31
B
297 307Right-handed alpha
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There are 3 sheets in PDB entry 2EB0. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
28 31parallel
Strand 3
A
2 5parallel
Strand 4
A
61 65parallel
Strand 5
A
81 87parallel
Strand 6
A
100 103parallel
Strand 7
B
100 103anti-parallel
Strand 8
B
81 87parallel
Strand 9
B
61 65parallel
Strand 10
B
2 5parallel
Strand 11
B
28 31parallel
Strand 12
B
52 53parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 208first strand
Strand 2
A
211 220anti-parallel
Strand 3
A
248 255parallel
Strand 4
A
260 267anti-parallel
Strand 5
A
284 287anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 208first strand
Strand 2
B
211 220anti-parallel
Strand 3
B
248 255parallel
Strand 4
B
260 267anti-parallel
Strand 5
B
284 287anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il