Analysis of interatomic Contacts of Structural Units in PDB entry:
2EB6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2EB6 entry

There are 5 chains in PDB entry 2EB6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 267
B	MET 1	VAL 267
C	MET 1	VAL 267
D	MET 1	VAL 267
E	MET 1	VAL 267

There are 60 helices in PDB entry 2EB6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	3	21	Right-handed alpha
Helix 2	2	A	26	31	Right-handed alpha
Helix 3	3	A	35	53	Right-handed alpha
Helix 4	4	A	66	73	Right-handed alpha
Helix 5	5	A	96	100	Right-handed 310
Helix 6	6	A	123	130	Right-handed alpha
Helix 7	7	A	157	164	Right-handed alpha
Helix 8	8	A	184	187	Right-handed 310
Helix 9	9	A	205	207	Right-handed 310
Helix 10	10	A	212	223	Right-handed alpha
Helix 11	11	A	224	226	Right-handed 310
Helix 12	12	A	257	259	Right-handed 310
Helix 13	13	B	3	21	Right-handed alpha
Helix 14	14	B	26	31	Right-handed alpha
Helix 15	15	B	35	53	Right-handed alpha
Helix 16	16	B	66	73	Right-handed alpha
Helix 17	17	B	96	100	Right-handed 310
Helix 18	18	B	123	130	Right-handed alpha
Helix 19	19	B	157	164	Right-handed alpha
Helix 20	20	B	184	187	Right-handed 310
Helix 21	21	B	205	207	Right-handed 310
Helix 22	22	B	212	223	Right-handed alpha
Helix 23	23	B	224	226	Right-handed 310
Helix 24	24	B	257	259	Right-handed 310
Helix 25	25	C	3	21	Right-handed alpha
Helix 26	26	C	26	31	Right-handed alpha
Helix 27	27	C	35	53	Right-handed alpha
Helix 28	28	C	66	73	Right-handed alpha
Helix 29	29	C	98	100	Right-handed 310
Helix 30	30	C	123	130	Right-handed alpha
Helix 31	31	C	156	164	Right-handed alpha
Helix 32	32	C	184	187	Right-handed 310
Helix 33	33	C	205	207	Right-handed 310
Helix 34	34	C	212	223	Right-handed alpha
Helix 35	35	C	224	226	Right-handed 310
Helix 36	36	C	257	259	Right-handed 310
Helix 37	37	D	3	21	Right-handed alpha
Helix 38	38	D	26	31	Right-handed alpha
Helix 39	39	D	35	53	Right-handed alpha
Helix 40	40	D	66	72	Right-handed alpha
Helix 41	41	D	98	100	Right-handed 310
Helix 42	42	D	123	130	Right-handed alpha
Helix 43	43	D	157	164	Right-handed alpha
Helix 44	44	D	184	187	Right-handed 310
Helix 45	45	D	205	207	Right-handed 310
Helix 46	46	D	212	223	Right-handed alpha
Helix 47	47	D	224	226	Right-handed 310
Helix 48	48	D	257	259	Right-handed 310
Helix 49	49	E	3	21	Right-handed alpha
Helix 50	50	E	26	31	Right-handed alpha
Helix 51	51	E	35	53	Right-handed alpha
Helix 52	52	E	66	73	Right-handed alpha
Helix 53	53	E	98	100	Right-handed 310
Helix 54	54	E	123	130	Right-handed alpha
Helix 55	55	E	157	164	Right-handed alpha
Helix 56	56	E	184	187	Right-handed 310
Helix 57	57	E	205	207	Right-handed 310
Helix 58	58	E	212	223	Right-handed alpha
Helix 59	59	E	224	226	Right-handed 310
Helix 60	60	E	257	259	Right-handed 310

There are 15 sheets in PDB entry 2EB6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	84	first strand
Strand 2	A	57	63	anti-parallel
Strand 3	A	234	239	parallel
Strand 4	A	104	113	anti-parallel
Strand 5	A	131	141	anti-parallel
Strand 6	A	168	173	anti-parallel
Strand 7	A	88	89	parallel

Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	84	first strand
Strand 2	A	57	63	anti-parallel
Strand 3	A	234	239	parallel
Strand 4	A	104	113	anti-parallel
Strand 5	A	244	245	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	95	first strand
Strand 2	A	261	266	parallel
Strand 3	A	251	255	anti-parallel
Strand 4	A	189	194	anti-parallel
Strand 5	A	197	203	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	84	first strand
Strand 2	B	57	63	anti-parallel
Strand 3	B	234	239	parallel
Strand 4	B	104	113	anti-parallel
Strand 5	B	131	141	anti-parallel
Strand 6	B	168	173	anti-parallel
Strand 7	B	88	89	parallel

Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	84	first strand
Strand 2	B	57	63	anti-parallel
Strand 3	B	234	239	parallel
Strand 4	B	104	113	anti-parallel
Strand 5	B	244	245	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	95	first strand
Strand 2	B	261	266	parallel
Strand 3	B	251	255	anti-parallel
Strand 4	B	189	194	anti-parallel
Strand 5	B	197	203	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	84	first strand
Strand 2	C	57	63	anti-parallel
Strand 3	C	234	239	parallel
Strand 4	C	104	113	anti-parallel
Strand 5	C	131	141	anti-parallel
Strand 6	C	168	173	anti-parallel
Strand 7	C	88	89	parallel

Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	84	first strand
Strand 2	C	57	63	anti-parallel
Strand 3	C	234	239	parallel
Strand 4	C	104	113	anti-parallel
Strand 5	C	244	245	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	96	first strand
Strand 2	C	261	267	parallel
Strand 3	C	251	255	anti-parallel
Strand 4	C	189	194	anti-parallel
Strand 5	C	197	203	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	84	first strand
Strand 2	D	57	63	anti-parallel
Strand 3	D	234	239	parallel
Strand 4	D	104	113	anti-parallel
Strand 5	D	131	141	anti-parallel
Strand 6	D	168	173	anti-parallel
Strand 7	D	88	89	parallel

Back to list of sheets
Back to top of page

There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	84	first strand
Strand 2	D	57	63	anti-parallel
Strand 3	D	234	239	parallel
Strand 4	D	104	113	anti-parallel
Strand 5	D	244	245	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	96	first strand
Strand 2	D	261	267	parallel
Strand 3	D	251	255	anti-parallel
Strand 4	D	189	194	anti-parallel
Strand 5	D	197	203	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	79	84	first strand
Strand 2	E	57	63	anti-parallel
Strand 3	E	234	239	parallel
Strand 4	E	104	113	anti-parallel
Strand 5	E	131	141	anti-parallel
Strand 6	E	168	173	anti-parallel
Strand 7	E	88	89	parallel

Back to list of sheets
Back to top of page

There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	79	84	first strand
Strand 2	E	57	63	anti-parallel
Strand 3	E	234	239	parallel
Strand 4	E	104	113	anti-parallel
Strand 5	E	244	245	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	94	96	first strand
Strand 2	E	261	267	parallel
Strand 3	E	251	255	anti-parallel
Strand 4	E	189	194	anti-parallel
Strand 5	E	197	203	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2EB6

Analysis of interatomic Contacts of Structural Units in PDB entry:
2EB6