Analysis of interatomic Contacts of Structural Units in PDB entry:
2EBD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2EBD entry

There are 2 chains in PDB entry 2EBD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TYR 309
B
 GLY 2TYR 309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 2EBD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 24Right-handed alpha
Helix 2
2
A
29 38Right-handed alpha
Helix 3
3
A
49 66Right-handed alpha
Helix 4
4
A
68 72Right-handed 310
Helix 5
5
A
88 98Right-handed alpha
Helix 6
6
A
109 111Right-handed 310
Helix 7
7
A
112 127Right-handed alpha
Helix 8
8
A
142 144Right-handed 310
Helix 9
9
A
183 187Right-handed 310
Helix 10
10
A
200 224Right-handed alpha
Helix 11
11
A
226 230Right-handed 310
Helix 12
12
A
239 250Right-handed alpha
Helix 13
13
A
253 257Right-handed 310
Helix 14
14
A
260 265Right-handed alpha
Helix 15
15
A
267 269Right-handed 310
Helix 16
16
A
270 282Right-handed alpha
Helix 17
17
B
19 24Right-handed alpha
Helix 18
18
B
29 38Right-handed alpha
Helix 19
19
B
49 66Right-handed alpha
Helix 20
20
B
68 72Right-handed 310
Helix 21
21
B
88 98Right-handed alpha
Helix 22
22
B
109 111Right-handed 310
Helix 23
23
B
112 127Right-handed alpha
Helix 24
24
B
142 144Right-handed 310
Helix 25
25
B
182 187Right-handed 310
Helix 26
26
B
200 224Right-handed alpha
Helix 27
27
B
226 230Right-handed 310
Helix 28
28
B
239 251Right-handed alpha
Helix 29
29
B
253 257Right-handed 310
Helix 30
30
B
260 265Right-handed alpha
Helix 31
31
B
267 269Right-handed 310
Helix 32
32
B
270 282Right-handed alpha
Helix 33
33
B
298 300Right-handed 310
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There are 7 sheets in PDB entry 2EBD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 11first strand
Strand 2
A
158 167anti-parallel
Strand 3
A
132 140anti-parallel
Strand 4
A
74 78parallel
Strand 5
A
103 108parallel
Strand 6
B
103 108anti-parallel
Strand 7
B
74 78parallel
Strand 8
B
132 140parallel
Strand 9
B
158 167anti-parallel
Strand 10
B
3 11anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 18first strand
Strand 2
A
41 44anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 181first strand
Strand 2
A
301 308anti-parallel
Strand 3
A
290 297anti-parallel
Strand 4
A
232 235parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 191first strand
Strand 2
A
197 199anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 18first strand
Strand 2
B
41 44anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 180first strand
Strand 2
B
301 308anti-parallel
Strand 3
B
290 297anti-parallel
Strand 4
B
232 235parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 191first strand
Strand 2
B
197 199anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il