Analysis of interatomic Contacts of Structural Units in PDB entry:
2EBJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2EBJ entry

There are 2 chains in PDB entry 2EBJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 192
B
 MET 1LEU 192
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2EBJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 21Right-handed alpha
Helix 2
2
A
22 25Right-handed 310
Helix 3
3
A
42 55Right-handed alpha
Helix 4
4
A
113 124Right-handed alpha
Helix 5
5
A
137 150Right-handed alpha
Helix 6
6
A
164 171Right-handed alpha
Helix 7
7
A
177 190Right-handed alpha
Helix 8
8
B
16 21Right-handed alpha
Helix 9
9
B
22 25Right-handed 310
Helix 10
10
B
42 55Right-handed alpha
Helix 11
11
B
113 124Right-handed alpha
Helix 12
12
B
137 150Right-handed alpha
Helix 13
13
B
164 171Right-handed alpha
Helix 14
14
B
177 190Right-handed alpha
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There are 4 sheets in PDB entry 2EBJ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 29first strand
Strand 2
A
32 39anti-parallel
Strand 3
A
2 7parallel
Strand 4
A
60 66parallel
Strand 5
A
156 161parallel
Strand 6
A
73 76anti-parallel
Strand 7
A
128 131parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 80first strand
Strand 2
A
107 109anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 29first strand
Strand 2
B
32 39anti-parallel
Strand 3
B
2 7parallel
Strand 4
B
60 66parallel
Strand 5
B
156 161parallel
Strand 6
B
73 76anti-parallel
Strand 7
B
128 131parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 80first strand
Strand 2
B
107 109anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il