Analysis of interatomic Contacts of Structural Units in PDB entry:
2EBN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2EBN entry

There is 1 chain in PDB entry 2EBN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5TRP 289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 2EBN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
A
A
23 27Right-handed alpha
Helix 2
B1
A
64 71Right-handed alpha
Helix 3
B2
A
73 82Right-handed alpha
Helix 4
C
A
105 122Right-handed alpha
Helix 5
D
A
149 162Right-handed alpha
Helix 6
E
A
174 176Right-handed 310
Helix 7
F
A
188 190Right-handed alpha
Helix 8
G
A
232 241Right-handed alpha
Helix 9
H
A
262 274Right-handed alpha
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There are 3 sheets in PDB entry 2EBN. Click on sheet of interest to get list of strands forming it: S1, S2, S3,

There are 9 strands in S1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 17first strand
Strand 2
A
41 52parallel
Strand 3
A
86 92parallel
Strand 4
A
126 130parallel
Strand 5
A
166 172parallel
Strand 6
A
194 197parallel
Strand 7
A
217 223parallel
Strand 8
A
245 249parallel
Strand 9
A
11 17parallel
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There are 2 strands in S2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
57 62anti-parallel
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There are 2 strands in S3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 31first strand
Strand 2
A
278 280anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il