Analysis of interatomic Contacts of Structural Units in PDB entry:
2ED6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2ED6 entry

There are 12 chains in PDB entry 2ED6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 32	THR 201
B	THR 32	THR 201
C	THR 32	THR 201
D	THR 32	THR 201
E	THR 32	THR 201
F	THR 32	THR 201
G	THR 32	THR 201
H	THR 32	THR 201
I	THR 32	THR 201
J	THR 32	THR 201
K	THR 32	THR 201
L	THR 32	THR 201

There are 46 helices in PDB entry 2ED6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	32	47	Right-handed alpha
Helix 2	2	A	87	92	Right-handed alpha
Helix 3	3	A	111	115	Right-handed 310
Helix 4	4	A	183	187	Right-handed 310
Helix 5	5	B	32	47	Right-handed alpha
Helix 6	6	B	87	92	Right-handed alpha
Helix 7	7	B	111	115	Right-handed 310
Helix 8	8	B	183	187	Right-handed 310
Helix 9	9	C	32	47	Right-handed alpha
Helix 10	10	C	87	92	Right-handed alpha
Helix 11	11	C	111	115	Right-handed 310
Helix 12	12	C	183	187	Right-handed 310
Helix 13	13	D	32	47	Right-handed alpha
Helix 14	14	D	87	92	Right-handed alpha
Helix 15	15	D	111	115	Right-handed 310
Helix 16	16	D	183	187	Right-handed 310
Helix 17	17	E	32	47	Right-handed alpha
Helix 18	18	E	87	92	Right-handed alpha
Helix 19	19	E	111	115	Right-handed 310
Helix 20	20	E	183	187	Right-handed 310
Helix 21	21	F	32	47	Right-handed alpha
Helix 22	22	F	87	92	Right-handed alpha
Helix 23	23	F	111	115	Right-handed 310
Helix 24	24	F	183	187	Right-handed 310
Helix 25	25	G	32	47	Right-handed alpha
Helix 26	26	G	87	92	Right-handed alpha
Helix 27	27	G	111	115	Right-handed 310
Helix 28	28	G	183	187	Right-handed 310
Helix 29	29	H	32	47	Right-handed alpha
Helix 30	30	H	87	92	Right-handed alpha
Helix 31	31	H	111	115	Right-handed 310
Helix 32	32	H	183	187	Right-handed 310
Helix 33	33	I	32	47	Right-handed alpha
Helix 34	34	I	87	92	Right-handed alpha
Helix 35	35	I	111	115	Right-handed 310
Helix 36	36	I	183	187	Right-handed 310
Helix 37	37	J	32	47	Right-handed alpha
Helix 38	38	J	87	92	Right-handed alpha
Helix 39	39	J	183	187	Right-handed 310
Helix 40	40	K	32	47	Right-handed alpha
Helix 41	41	K	87	92	Right-handed alpha
Helix 42	42	K	183	187	Right-handed 310
Helix 43	43	L	32	47	Right-handed alpha
Helix 44	44	L	87	92	Right-handed alpha
Helix 45	45	L	111	115	Right-handed 310
Helix 46	46	L	183	187	Right-handed 310

There are 36 sheets in PDB entry 2ED6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	67	first strand
Strand 2	A	49	58	anti-parallel
Strand 3	A	189	197	anti-parallel
Strand 4	A	132	141	anti-parallel
Strand 5	A	161	163	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	74	first strand
Strand 2	A	78	82	anti-parallel
Strand 3	A	98	102	parallel
Strand 4	A	122	126	anti-parallel
Strand 5	A	168	171	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	119	first strand
Strand 2	A	173	177	anti-parallel
Strand 3	A	154	158	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	67	first strand
Strand 2	B	49	58	anti-parallel
Strand 3	B	189	197	anti-parallel
Strand 4	B	132	141	anti-parallel
Strand 5	B	161	163	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	74	first strand
Strand 2	B	78	82	anti-parallel
Strand 3	B	98	102	parallel
Strand 4	B	122	126	anti-parallel
Strand 5	B	168	171	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	119	first strand
Strand 2	B	173	177	anti-parallel
Strand 3	B	154	158	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	67	first strand
Strand 2	C	49	58	anti-parallel
Strand 3	C	189	197	anti-parallel
Strand 4	C	132	141	anti-parallel
Strand 5	C	161	163	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	74	first strand
Strand 2	C	78	82	anti-parallel
Strand 3	C	98	102	parallel
Strand 4	C	122	126	anti-parallel
Strand 5	C	168	171	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	119	first strand
Strand 2	C	173	177	anti-parallel
Strand 3	C	154	158	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	67	first strand
Strand 2	D	49	58	anti-parallel
Strand 3	D	189	197	anti-parallel
Strand 4	D	132	141	anti-parallel
Strand 5	D	161	163	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	74	first strand
Strand 2	D	78	82	anti-parallel
Strand 3	D	98	102	parallel
Strand 4	D	122	126	anti-parallel
Strand 5	D	168	171	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	117	119	first strand
Strand 2	D	173	177	anti-parallel
Strand 3	D	154	158	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	65	67	first strand
Strand 2	E	49	58	anti-parallel
Strand 3	E	189	197	anti-parallel
Strand 4	E	132	141	anti-parallel
Strand 5	E	161	163	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	70	74	first strand
Strand 2	E	78	82	anti-parallel
Strand 3	E	98	102	parallel
Strand 4	E	122	126	anti-parallel
Strand 5	E	168	171	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	117	119	first strand
Strand 2	E	173	177	anti-parallel
Strand 3	E	154	158	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	65	67	first strand
Strand 2	F	49	58	anti-parallel
Strand 3	F	189	197	anti-parallel
Strand 4	F	132	141	anti-parallel
Strand 5	F	161	163	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	70	74	first strand
Strand 2	F	78	82	anti-parallel
Strand 3	F	98	102	parallel
Strand 4	F	122	126	anti-parallel
Strand 5	F	168	171	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	117	119	first strand
Strand 2	F	173	177	anti-parallel
Strand 3	F	154	158	anti-parallel

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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	65	67	first strand
Strand 2	G	49	58	anti-parallel
Strand 3	G	189	197	anti-parallel
Strand 4	G	132	141	anti-parallel
Strand 5	G	161	163	anti-parallel

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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	70	74	first strand
Strand 2	G	78	82	anti-parallel
Strand 3	G	98	102	parallel
Strand 4	G	122	126	anti-parallel
Strand 5	G	168	171	anti-parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	117	119	first strand
Strand 2	G	173	177	anti-parallel
Strand 3	G	154	158	anti-parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	65	67	first strand
Strand 2	H	49	58	anti-parallel
Strand 3	H	189	197	anti-parallel
Strand 4	H	132	141	anti-parallel
Strand 5	H	161	163	anti-parallel

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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	70	74	first strand
Strand 2	H	78	82	anti-parallel
Strand 3	H	98	102	parallel
Strand 4	H	122	126	anti-parallel
Strand 5	H	168	171	anti-parallel

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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	117	119	first strand
Strand 2	H	173	177	anti-parallel
Strand 3	H	154	158	anti-parallel

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There are 5 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	65	67	first strand
Strand 2	I	49	58	anti-parallel
Strand 3	I	189	197	anti-parallel
Strand 4	I	132	141	anti-parallel
Strand 5	I	161	163	anti-parallel

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There are 5 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	70	74	first strand
Strand 2	I	78	82	anti-parallel
Strand 3	I	98	102	parallel
Strand 4	I	122	126	anti-parallel
Strand 5	I	168	171	anti-parallel

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There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	117	119	first strand
Strand 2	I	173	177	anti-parallel
Strand 3	I	154	158	anti-parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	65	66	first strand
Strand 2	J	49	58	anti-parallel
Strand 3	J	189	197	anti-parallel
Strand 4	J	132	141	anti-parallel
Strand 5	J	161	163	anti-parallel

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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	70	74	first strand
Strand 2	J	78	82	anti-parallel
Strand 3	J	98	102	parallel
Strand 4	J	122	126	anti-parallel
Strand 5	J	168	177	anti-parallel
Strand 6	J	117	119	anti-parallel

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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	70	74	first strand
Strand 2	J	78	82	anti-parallel
Strand 3	J	98	102	parallel
Strand 4	J	122	126	anti-parallel
Strand 5	J	168	177	anti-parallel
Strand 6	J	154	159	anti-parallel

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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	65	66	first strand
Strand 2	K	49	58	anti-parallel
Strand 3	K	189	197	anti-parallel
Strand 4	K	132	141	anti-parallel
Strand 5	K	161	163	anti-parallel

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There are 5 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	70	74	first strand
Strand 2	K	78	82	anti-parallel
Strand 3	K	98	102	parallel
Strand 4	K	122	126	anti-parallel
Strand 5	K	168	171	anti-parallel

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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	117	119	first strand
Strand 2	K	173	177	anti-parallel
Strand 3	K	154	158	anti-parallel

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There are 5 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	65	66	first strand
Strand 2	L	49	58	anti-parallel
Strand 3	L	189	197	anti-parallel
Strand 4	L	132	141	anti-parallel
Strand 5	L	161	163	anti-parallel

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There are 6 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	70	74	first strand
Strand 2	L	78	82	anti-parallel
Strand 3	L	98	102	parallel
Strand 4	L	122	126	anti-parallel
Strand 5	L	168	177	anti-parallel
Strand 6	L	117	119	anti-parallel

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There are 6 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	70	74	first strand
Strand 2	L	78	82	anti-parallel
Strand 3	L	98	102	parallel
Strand 4	L	122	126	anti-parallel
Strand 5	L	168	177	anti-parallel
Strand 6	L	154	159	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2ED6

Analysis of interatomic Contacts of Structural Units in PDB entry:
2ED6