Analysis of interatomic Contacts of Structural Units in PDB entry:
2EFB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2EFB entry

There are 2 chains in PDB entry 2EFB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1ASN 595
B
 SER 1ASN 595
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 55 helices in PDB entry 2EFB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
74 82Right-handed alpha
Helix 2
2
A
98 112Right-handed alpha
Helix 3
3
A
124 131Right-handed alpha
Helix 4
4
A
149 154Right-handed alpha
Helix 5
5
A
189 194Right-handed alpha
Helix 6
6
A
196 203Right-handed alpha
Helix 7
7
A
235 240Right-handed alpha
Helix 8
8
A
259 284Right-handed alpha
Helix 9
9
A
288 311Right-handed alpha
Helix 10
10
A
312 318Right-handed alpha
Helix 11
11
A
320 325Right-handed alpha
Helix 12
12
A
342 347Right-handed alpha
Helix 13
13
A
348 353Right-handed 310
Helix 14
14
A
377 379Right-handed 310
Helix 15
15
A
383 388Right-handed alpha
Helix 16
16
A
391 402Right-handed alpha
Helix 17
17
A
414 419Right-handed alpha
Helix 18
18
A
432 444Right-handed alpha
Helix 19
19
A
448 456Right-handed alpha
Helix 20
20
A
463 472Right-handed alpha
Helix 21
21
A
473 485Right-handed alpha
Helix 22
22
A
486 490Right-handed 310
Helix 23
23
A
491 499Right-handed alpha
Helix 24
24
A
508 525Right-handed alpha
Helix 25
25
A
537 545Right-handed alpha
Helix 26
26
A
548 557Right-handed alpha
Helix 27
27
A
580 582Right-handed 310
Helix 28
28
A
587 591Right-handed 310
Helix 29
29
B
74 83Right-handed alpha
Helix 30
30
B
98 112Right-handed alpha
Helix 31
31
B
124 131Right-handed alpha
Helix 32
32
B
148 155Right-handed alpha
Helix 33
33
B
189 194Right-handed alpha
Helix 34
34
B
196 203Right-handed alpha
Helix 35
35
B
235 240Right-handed alpha
Helix 36
36
B
259 284Right-handed alpha
Helix 37
37
B
288 311Right-handed alpha
Helix 38
38
B
312 318Right-handed alpha
Helix 39
39
B
320 325Right-handed alpha
Helix 40
40
B
342 347Right-handed alpha
Helix 41
41
B
348 353Right-handed 310
Helix 42
42
B
377 380Right-handed 310
Helix 43
43
B
383 388Right-handed alpha
Helix 44
44
B
392 402Right-handed alpha
Helix 45
45
B
414 419Right-handed alpha
Helix 46
46
B
432 444Right-handed alpha
Helix 47
47
B
448 456Right-handed alpha
Helix 48
48
B
463 472Right-handed alpha
Helix 49
49
B
473 485Right-handed alpha
Helix 50
50
B
491 499Right-handed alpha
Helix 51
51
B
508 525Right-handed alpha
Helix 52
52
B
537 545Right-handed alpha
Helix 53
53
B
548 557Right-handed alpha
Helix 54
54
B
580 582Right-handed 310
Helix 55
55
B
587 591Right-handed 310
Back to top of page

There are 10 sheets in PDB entry 2EFB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 42first strand
Strand 2
A
180 181anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 97first strand
Strand 2
A
403 405anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 143first strand
Strand 2
A
157 158anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 359first strand
Strand 2
A
373 375anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
561 563first strand
Strand 2
A
576 578anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 42first strand
Strand 2
B
180 181anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 97first strand
Strand 2
B
403 405anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 143first strand
Strand 2
B
157 158anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
357 359first strand
Strand 2
B
373 375anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
561 563first strand
Strand 2
B
576 578anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il