Analysis of interatomic Contacts of Structural Units in PDB entry:
2EFD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2EFD entry

There are 4 chains in PDB entry 2EFD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 17ARG 262
B
 SER 8PRO 172
C
 MET 17ARG 262
D
 SER 8PRO 172
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 41 helices in PDB entry 2EFD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 38Right-handed alpha
Helix 2
2
A
42 64Right-handed alpha
Helix 3
3
A
72 90Right-handed alpha
Helix 4
4
A
90 95Right-handed alpha
Helix 5
5
A
98 116Right-handed alpha
Helix 6
6
A
121 125Right-handed 310
Helix 7
7
A
127 131Right-handed 310
Helix 8
8
A
136 144Right-handed alpha
Helix 9
9
A
145 149Right-handed 310
Helix 10
10
A
151 177Right-handed alpha
Helix 11
11
A
183 199Right-handed alpha
Helix 12
12
A
202 214Right-handed alpha
Helix 13
13
A
215 219Right-handed 310
Helix 14
14
A
221 239Right-handed alpha
Helix 15
15
A
240 246Right-handed 310
Helix 16
16
A
248 262Right-handed alpha
Helix 17
17
B
22 29Right-handed alpha
Helix 18
18
B
69 74Right-handed 310
Helix 19
19
B
75 80Right-handed alpha
Helix 20
20
B
95 112Right-handed alpha
Helix 21
21
B
134 145Right-handed alpha
Helix 22
22
B
159 170Right-handed alpha
Helix 23
23
C
19 21Right-handed 310
Helix 24
24
C
22 38Right-handed alpha
Helix 25
25
C
42 64Right-handed alpha
Helix 26
26
C
71 95Right-handed alpha
Helix 27
27
C
98 116Right-handed alpha
Helix 28
28
C
120 125Right-handed 310
Helix 29
29
C
127 131Right-handed 310
Helix 30
30
C
136 145Right-handed alpha
Helix 31
31
C
146 149Right-handed 310
Helix 32
32
C
151 178Right-handed alpha
Helix 33
33
C
183 199Right-handed alpha
Helix 34
34
C
202 214Right-handed alpha
Helix 35
35
C
220 240Right-handed alpha
Helix 36
36
C
248 260Right-handed alpha
Helix 37
37
D
22 28Right-handed alpha
Helix 38
38
D
69 80Right-handed 310
Helix 39
39
D
95 111Right-handed alpha
Helix 40
40
D
134 145Right-handed alpha
Helix 41
41
D
159 170Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 2EFD. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 54first strand
Strand 2
B
57 64anti-parallel
Strand 3
B
10 16parallel
Strand 4
B
85 91parallel
Strand 5
B
117 123parallel
Strand 6
B
148 151parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
47 54first strand
Strand 2
D
57 64anti-parallel
Strand 3
D
11 16parallel
Strand 4
D
85 91parallel
Strand 5
D
117 123parallel
Strand 6
D
148 150parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il