Analysis of interatomic Contacts of Structural Units in PDB entry:
2EGV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2EGV entry

There are 2 chains in PDB entry 2EGV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 229
B
 MET 1PHE 229
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2EGV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 27Right-handed alpha
Helix 2
2
A
83 97Right-handed alpha
Helix 3
3
A
112 135Right-handed alpha
Helix 4
4
A
149 151Right-handed 310
Helix 5
5
A
169 173Right-handed 310
Helix 6
6
A
191 201Right-handed alpha
Helix 7
7
A
214 229Right-handed alpha
Helix 8
8
B
18 28Right-handed alpha
Helix 9
9
B
83 97Right-handed alpha
Helix 10
10
B
112 135Right-handed alpha
Helix 11
11
B
149 151Right-handed 310
Helix 12
12
B
169 173Right-handed 310
Helix 13
13
B
191 202Right-handed alpha
Helix 14
14
B
214 229Right-handed alpha
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There are 6 sheets in PDB entry 2EGV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
35 39parallel
Strand 3
A
42 51anti-parallel
Strand 4
A
55 63anti-parallel
Strand 5
A
13 17anti-parallel
Strand 6
A
9 10anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 142first strand
Strand 2
A
100 105parallel
Strand 3
A
146 147parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 142first strand
Strand 2
A
100 105parallel
Strand 3
A
72 78parallel
Strand 4
A
179 184parallel
Strand 5
A
157 161parallel
Strand 6
A
204 206parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 5first strand
Strand 2
B
35 39parallel
Strand 3
B
42 51anti-parallel
Strand 4
B
56 63anti-parallel
Strand 5
B
13 16anti-parallel
Strand 6
B
9 10anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 142first strand
Strand 2
B
100 105parallel
Strand 3
B
146 147parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 142first strand
Strand 2
B
100 105parallel
Strand 3
B
72 78parallel
Strand 4
B
179 184parallel
Strand 5
B
157 161parallel
Strand 6
B
204 206parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il