Analysis of interatomic Contacts of Structural Units in PDB entry:
2EJW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2EJW entry

There are 4 chains in PDB entry 2EJW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 331
B	MET 1	VAL 331
E	MET 1	VAL 331
F	MET 1	VAL 331

There are 64 helices in PDB entry 2EJW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	12	25	Right-handed alpha
Helix 2	2	A	26	32	Right-handed 310
Helix 3	3	A	53	55	Right-handed 310
Helix 4	4	A	77	90	Right-handed alpha
Helix 5	5	A	98	105	Right-handed alpha
Helix 6	6	A	105	115	Right-handed alpha
Helix 7	7	A	120	124	Right-handed 310
Helix 8	8	A	130	138	Right-handed alpha
Helix 9	9	A	150	162	Right-handed alpha
Helix 10	10	A	165	176	Right-handed alpha
Helix 11	11	A	183	188	Right-handed alpha
Helix 12	12	A	189	204	Right-handed alpha
Helix 13	13	A	209	213	Right-handed 310
Helix 14	14	A	222	232	Right-handed alpha
Helix 15	15	A	262	267	Right-handed alpha
Helix 16	16	A	290	307	Right-handed alpha
Helix 17	17	B	12	25	Right-handed alpha
Helix 18	18	B	25	31	Right-handed alpha
Helix 19	19	B	53	55	Right-handed 310
Helix 20	20	B	77	90	Right-handed alpha
Helix 21	21	B	98	105	Right-handed alpha
Helix 22	22	B	105	115	Right-handed alpha
Helix 23	23	B	120	124	Right-handed 310
Helix 24	24	B	130	138	Right-handed alpha
Helix 25	25	B	150	162	Right-handed alpha
Helix 26	26	B	165	176	Right-handed alpha
Helix 27	27	B	183	188	Right-handed alpha
Helix 28	28	B	189	204	Right-handed alpha
Helix 29	29	B	209	213	Right-handed 310
Helix 30	30	B	222	232	Right-handed alpha
Helix 31	31	B	262	267	Right-handed alpha
Helix 32	32	B	290	307	Right-handed alpha
Helix 33	33	E	12	25	Right-handed alpha
Helix 34	34	E	25	31	Right-handed alpha
Helix 35	35	E	53	55	Right-handed 310
Helix 36	36	E	77	90	Right-handed alpha
Helix 37	37	E	98	105	Right-handed alpha
Helix 38	38	E	105	115	Right-handed alpha
Helix 39	39	E	120	124	Right-handed 310
Helix 40	40	E	130	138	Right-handed alpha
Helix 41	41	E	150	162	Right-handed alpha
Helix 42	42	E	165	176	Right-handed alpha
Helix 43	43	E	183	188	Right-handed alpha
Helix 44	44	E	189	204	Right-handed alpha
Helix 45	45	E	209	213	Right-handed 310
Helix 46	46	E	222	232	Right-handed alpha
Helix 47	47	E	262	267	Right-handed alpha
Helix 48	48	E	290	307	Right-handed alpha
Helix 49	49	F	12	25	Right-handed alpha
Helix 50	50	F	25	31	Right-handed alpha
Helix 51	51	F	53	55	Right-handed 310
Helix 52	52	F	77	90	Right-handed alpha
Helix 53	53	F	98	105	Right-handed alpha
Helix 54	54	F	105	114	Right-handed alpha
Helix 55	55	F	120	124	Right-handed 310
Helix 56	56	F	130	138	Right-handed alpha
Helix 57	57	F	150	161	Right-handed alpha
Helix 58	58	F	165	177	Right-handed alpha
Helix 59	59	F	183	188	Right-handed alpha
Helix 60	60	F	189	204	Right-handed alpha
Helix 61	61	F	209	213	Right-handed 310
Helix 62	62	F	222	231	Right-handed alpha
Helix 63	63	F	262	267	Right-handed alpha
Helix 64	64	F	290	307	Right-handed alpha

There are 6 sheets in PDB entry 2EJW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	58	first strand
Strand 2	A	34	42	parallel
Strand 3	A	2	9	parallel
Strand 4	A	69	72	parallel
Strand 5	A	94	96	parallel
Strand 6	A	118	119	parallel

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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	215	first strand
Strand 2	A	248	259	parallel
Strand 3	A	234	245	anti-parallel
Strand 4	A	141	148	anti-parallel
Strand 5	A	270	277	anti-parallel
Strand 6	A	280	286	anti-parallel
Strand 7	B	280	286	anti-parallel
Strand 8	B	270	277	anti-parallel
Strand 9	B	141	148	anti-parallel
Strand 10	B	234	245	anti-parallel
Strand 11	B	248	259	anti-parallel
Strand 12	B	214	215	parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	58	first strand
Strand 2	B	34	42	parallel
Strand 3	B	2	9	parallel
Strand 4	B	69	72	parallel
Strand 5	B	94	96	parallel
Strand 6	B	118	119	parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	57	58	first strand
Strand 2	E	34	42	parallel
Strand 3	E	2	9	parallel
Strand 4	E	69	72	parallel
Strand 5	E	94	96	parallel
Strand 6	E	118	119	parallel

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There are 12 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	214	215	first strand
Strand 2	E	248	259	parallel
Strand 3	E	234	245	anti-parallel
Strand 4	E	141	148	anti-parallel
Strand 5	E	270	277	anti-parallel
Strand 6	E	280	286	anti-parallel
Strand 7	F	280	286	anti-parallel
Strand 8	F	270	277	anti-parallel
Strand 9	F	141	148	anti-parallel
Strand 10	F	234	245	anti-parallel
Strand 11	F	248	259	anti-parallel
Strand 12	F	214	215	parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	57	58	first strand
Strand 2	F	35	42	parallel
Strand 3	F	3	9	parallel
Strand 4	F	69	72	parallel
Strand 5	F	94	96	parallel
Strand 6	F	118	119	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2EJW

Analysis of interatomic Contacts of Structural Units in PDB entry:
2EJW