Analysis of interatomic Contacts of Structural Units in PDB entry:
2EPJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2EPJ entry

There is 1 chain in PDB entry 2EPJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 9SER 434
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 2EPJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 20Right-handed alpha
Helix 2
2
A
21 22Right-handed 310
Helix 3
3
A
23 27Right-handed 310
Helix 4
4
A
29 35Right-handed 310
Helix 5
5
A
62 66Right-handed 310
Helix 6
6
A
74 87Right-handed alpha
Helix 7
7
A
95 110Right-handed alpha
Helix 8
8
A
120 137Right-handed alpha
Helix 9
9
A
152 155Right-handed 310
Helix 10
10
A
175 180Right-handed alpha
Helix 11
11
A
189 201Right-handed alpha
Helix 12
12
A
222 237Right-handed alpha
Helix 13
13
A
254 261Right-handed alpha
Helix 14
14
A
272 275Right-handed 310
Helix 15
15
A
285 290Right-handed alpha
Helix 16
16
A
307 324Right-handed alpha
Helix 17
17
A
325 349Right-handed alpha
Helix 18
18
A
372 377Right-handed alpha
Helix 19
19
A
380 394Right-handed alpha
Helix 20
20
A
413 433Right-handed alpha
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There are 4 sheets in PDB entry 2EPJ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 46first strand
Strand 2
A
49 52anti-parallel
Strand 3
A
57 60anti-parallel
Strand 4
A
396 397parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 118first strand
Strand 2
A
280 284anti-parallel
Strand 3
A
266 270anti-parallel
Strand 4
A
239 244parallel
Strand 5
A
204 209parallel
Strand 6
A
140 145parallel
Strand 7
A
182 186parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 158first strand
Strand 2
A
168 169anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 357first strand
Strand 2
A
360 365anti-parallel
Strand 3
A
406 407anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il