Analysis of interatomic Contacts of Structural Units in PDB entry:
2EQ5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2EQ5 entry

There are 4 chains in PDB entry 2EQ5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3ARG 217
B
 LYS 3GLU 218
C
 LYS 3ARG 217
D
 LYS 3ARG 217
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 41 helices in PDB entry 2EQ5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 21Right-handed alpha
Helix 2
2
A
21 31Right-handed alpha
Helix 3
3
A
50 71Right-handed alpha
Helix 4
4
A
85 93Right-handed alpha
Helix 5
5
A
100 110Right-handed alpha
Helix 6
6
A
125 133Right-handed alpha
Helix 7
7
A
147 152Right-handed 310
Helix 8
8
A
153 170Right-handed alpha
Helix 9
9
A
180 186Right-handed alpha
Helix 10
10
A
187 196Right-handed alpha
Helix 11
11
A
201 216Right-handed alpha
Helix 12
12
B
16 21Right-handed alpha
Helix 13
13
B
21 31Right-handed alpha
Helix 14
14
B
50 71Right-handed alpha
Helix 15
15
B
85 93Right-handed alpha
Helix 16
16
B
100 109Right-handed alpha
Helix 17
17
B
125 133Right-handed alpha
Helix 18
18
B
147 152Right-handed 310
Helix 19
19
B
153 170Right-handed alpha
Helix 20
20
B
187 196Right-handed alpha
Helix 21
21
B
201 216Right-handed alpha
Helix 22
22
C
16 21Right-handed alpha
Helix 23
23
C
21 31Right-handed alpha
Helix 24
24
C
50 71Right-handed alpha
Helix 25
25
C
85 93Right-handed alpha
Helix 26
26
C
100 110Right-handed alpha
Helix 27
27
C
125 133Right-handed alpha
Helix 28
28
C
148 152Right-handed 310
Helix 29
29
C
153 170Right-handed alpha
Helix 30
30
C
180 185Right-handed alpha
Helix 31
31
C
186 195Right-handed alpha
Helix 32
32
C
201 216Right-handed alpha
Helix 33
33
D
16 21Right-handed alpha
Helix 34
34
D
21 31Right-handed alpha
Helix 35
35
D
50 72Right-handed alpha
Helix 36
36
D
85 91Right-handed alpha
Helix 37
37
D
100 109Right-handed alpha
Helix 38
38
D
125 133Right-handed alpha
Helix 39
39
D
157 170Right-handed alpha
Helix 40
40
D
186 193Right-handed alpha
Helix 41
41
D
201 216Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 2EQ5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 40first strand
Strand 2
A
4 10parallel
Strand 3
A
75 78parallel
Strand 4
A
97 99parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 140first strand
Strand 2
A
115 118parallel
Strand 3
A
174 177parallel
Strand 4
A
199 200parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 40first strand
Strand 2
B
4 10parallel
Strand 3
B
75 79parallel
Strand 4
B
97 99parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 140first strand
Strand 2
B
115 118parallel
Strand 3
B
174 177parallel
Strand 4
B
199 200parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
34 40first strand
Strand 2
C
4 10parallel
Strand 3
C
75 79parallel
Strand 4
C
97 99parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
136 140first strand
Strand 2
C
115 118parallel
Strand 3
C
174 177parallel
Strand 4
C
199 200parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
34 40first strand
Strand 2
D
4 10parallel
Strand 3
D
75 79parallel
Strand 4
D
97 99parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
136 140first strand
Strand 2
D
115 118parallel
Strand 3
D
174 177parallel
Strand 4
D
199 200parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il