Analysis of interatomic Contacts of Structural Units in PDB entry:
2ERR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2ERR entry

There are 2 chains in PDB entry 2ERR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASN 109MET 196
B
U 197 U 203
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 2ERR. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
129 137Right-handed alpha
Helix 2
2
A
138 140Right-handed 310
Helix 3
3
A
166 177Right-handed alpha
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There are 2 sheets in PDB entry 2ERR. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
146 148first strand
Strand 2
A
158 162anti-parallel
Strand 3
A
118 122anti-parallel
Strand 4
A
187 190anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
180 181first strand
Strand 2
A
184 185anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il