Analysis of interatomic Contacts of Structural Units in PDB entry:
2F1R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2F1R entry

There are 2 chains in PDB entry 2F1R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3GLU 162
B
 LEU 3LEU 160
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 2F1R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 29Right-handed alpha
Helix 2
2
A
51 60Right-handed alpha
Helix 3
3
A
78 83Right-handed alpha
Helix 4
4
A
84 93Right-handed alpha
Helix 5
5
A
104 108Right-handed 310
Helix 6
6
A
117 125Right-handed 310
Helix 7
7
A
148 161Right-handed alpha
Helix 8
8
B
13 29Right-handed alpha
Helix 9
9
B
52 60Right-handed alpha
Helix 10
10
B
78 83Right-handed alpha
Helix 11
11
B
84 93Right-handed alpha
Helix 12
12
B
104 108Right-handed 310
Helix 13
13
B
117 125Right-handed 310
Helix 14
14
B
148 160Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 2F1R.

There are 16 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
129 133parallel
Strand 3
A
111 114parallel
Strand 4
A
4 9parallel
Strand 5
A
98 102parallel
Strand 6
A
33 37parallel
Strand 7
B
62 66parallel
Strand 8
B
70 76anti-parallel
Strand 9
A
70 76anti-parallel
Strand 10
A
62 66anti-parallel
Strand 11
B
33 38parallel
Strand 12
B
98 102parallel
Strand 13
B
4 9parallel
Strand 14
B
111 114parallel
Strand 15
B
129 133parallel
Strand 16
B
143 144parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il