Analysis of interatomic Contacts of Structural Units in PDB entry:
2F6D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2F6D entry

There is 1 chain in PDB entry 2F6D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ALA 492
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 2F6D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 36Right-handed alpha
Helix 2
2
A
68 85Right-handed alpha
Helix 3
3
A
88 107Right-handed alpha
Helix 4
4
A
117 125Right-handed 310
Helix 5
5
A
144 165Right-handed alpha
Helix 6
6
A
181 189Right-handed alpha
Helix 7
7
A
189 201Right-handed alpha
Helix 8
8
A
216 237Right-handed alpha
Helix 9
9
A
239 259Right-handed alpha
Helix 10
10
A
275 281Right-handed alpha
Helix 11
11
A
289 299Right-handed alpha
Helix 12
12
A
313 331Right-handed alpha
Helix 13
13
A
332 335Right-handed 310
Helix 14
14
A
362 384Right-handed alpha
Helix 15
15
A
393 401Right-handed alpha
Helix 16
16
A
403 408Right-handed alpha
Helix 17
17
A
410 414Right-handed 310
Helix 18
18
A
423 448Right-handed alpha
Helix 19
19
A
471 491Right-handed alpha
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There are 4 sheets in PDB entry 2F6D. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
127 128anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 266first strand
Strand 2
A
271 272anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 390first strand
Strand 2
A
416 419anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 458first strand
Strand 2
A
465 466anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il