Analysis of interatomic Contacts of Structural Units in PDB entry:
2F6Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2F6Q entry

There are 3 chains in PDB entry 2F6Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -6ASN 352
B
 PHE 109ARG 360
C
 GLY 108PHE 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 40 helices in PDB entry 2F6Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
127 131Right-handed 310
Helix 2
2
A
135 152Right-handed alpha
Helix 3
3
A
181 203Right-handed alpha
Helix 4
4
A
218 223Right-handed alpha
Helix 5
5
A
224 227Right-handed 310
Helix 6
6
A
242 246Right-handed 310
Helix 7
7
A
252 262Right-handed alpha
Helix 8
8
A
262 271Right-handed alpha
Helix 9
9
A
278 284Right-handed alpha
Helix 10
10
A
295 308Right-handed alpha
Helix 11
11
A
311 324Right-handed alpha
Helix 12
12
A
326 346Right-handed alpha
Helix 13
13
A
347 352Right-handed alpha
Helix 14
14
B
127 131Right-handed 310
Helix 15
15
B
135 152Right-handed alpha
Helix 16
16
B
171 176Right-handed 310
Helix 17
17
B
181 203Right-handed alpha
Helix 18
18
B
218 223Right-handed alpha
Helix 19
19
B
224 227Right-handed 310
Helix 20
20
B
252 262Right-handed alpha
Helix 21
21
B
262 271Right-handed alpha
Helix 22
22
B
278 284Right-handed alpha
Helix 23
23
B
292 294Right-handed 310
Helix 24
24
B
295 308Right-handed alpha
Helix 25
25
B
311 324Right-handed alpha
Helix 26
26
B
326 345Right-handed alpha
Helix 27
27
B
347 360Right-handed alpha
Helix 28
28
C
127 131Right-handed 310
Helix 29
29
C
135 152Right-handed alpha
Helix 30
30
C
183 203Right-handed alpha
Helix 31
31
C
218 223Right-handed alpha
Helix 32
32
C
224 227Right-handed 310
Helix 33
33
C
242 246Right-handed 310
Helix 34
34
C
252 262Right-handed alpha
Helix 35
35
C
262 271Right-handed alpha
Helix 36
36
C
278 284Right-handed alpha
Helix 37
37
C
295 308Right-handed alpha
Helix 38
38
C
311 324Right-handed alpha
Helix 39
39
C
326 347Right-handed alpha
Helix 40
40
C
347 356Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 2F6Q. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-1 108first strand
Strand 2
A
112 117anti-parallel
Strand 3
A
120 125anti-parallel
Strand 4
A
156 161parallel
Strand 5
A
208 212parallel
Strand 6
A
229 233parallel
Strand 7
A
289 291parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 217first strand
Strand 2
A
237 239parallel
Strand 3
A
276 277anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 117first strand
Strand 2
B
120 125anti-parallel
Strand 3
B
156 161parallel
Strand 4
B
208 212parallel
Strand 5
B
229 233parallel
Strand 6
B
289 291parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 217first strand
Strand 2
B
237 239parallel
Strand 3
B
275 277anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
112 117first strand
Strand 2
C
120 125anti-parallel
Strand 3
C
156 161parallel
Strand 4
C
208 212parallel
Strand 5
C
229 233parallel
Strand 6
C
289 291parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
216 217first strand
Strand 2
C
237 239parallel
Strand 3
C
276 277anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il