Analysis of interatomic Contacts of Structural Units in PDB entry:
2F84


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2F84 entry

There is 1 chain in PDB entry 2F84 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 323
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 2F84. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 15Right-handed alpha
Helix 2
2
A
25 39Right-handed alpha
Helix 3
3
A
41 50Right-handed alpha
Helix 4
4
A
51 56Right-handed 310
Helix 5
5
A
59 64Right-handed alpha
Helix 6
6
A
66 74Right-handed alpha
Helix 7
7
A
77 95Right-handed alpha
Helix 8
8
A
96 98Right-handed 310
Helix 9
9
A
106 109Right-handed 310
Helix 10
10
A
112 129Right-handed alpha
Helix 11
11
A
142 155Right-handed alpha
Helix 12
12
A
169 176Right-handed 310
Helix 13
13
A
199 206Right-handed alpha
Helix 14
14
A
209 228Right-handed alpha
Helix 15
15
A
230 234Right-handed 310
Helix 16
16
A
245 256Right-handed alpha
Helix 17
17
A
272 281Right-handed alpha
Helix 18
18
A
284 286Right-handed 310
Helix 19
19
A
293 298Right-handed alpha
Helix 20
20
A
301 322Right-handed alpha
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There are 2 sheets in PDB entry 2F84. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 22first strand
Strand 2
A
100 104parallel
Strand 3
A
133 139parallel
Strand 4
A
161 164parallel
Strand 5
A
187 191parallel
Strand 6
A
237 240parallel
Strand 7
A
261 263parallel
Strand 8
A
288 292parallel
Strand 9
A
18 22parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 179first strand
Strand 2
A
184 185anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il