Analysis of interatomic Contacts of Structural Units in PDB entry:
2F86

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2F86 entry

There are 7 chains in PDB entry 2F86 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASN 343	THR 471
D	ASN 343	THR 471
F	ASN 343	THR 471
H	ASN 343	THR 471
J	ASN 343	THR 471
L	ASN 343	THR 471
N	ASN 343	THR 471

There are 31 helices in PDB entry 2F86. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	B	343	367	Right-handed alpha
Helix 2	2	B	368	375	Right-handed alpha
Helix 3	3	B	384	388	Right-handed 310
Helix 4	4	B	395	400	Right-handed alpha
Helix 5	5	D	343	366	Right-handed alpha
Helix 6	6	D	368	375	Right-handed alpha
Helix 7	7	D	385	388	Right-handed 310
Helix 8	8	D	395	400	Right-handed alpha
Helix 9	9	D	401	403	Right-handed 310
Helix 10	10	F	343	366	Right-handed alpha
Helix 11	11	F	368	375	Right-handed alpha
Helix 12	12	F	384	388	Right-handed 310
Helix 13	13	F	395	403	Right-handed 310
Helix 14	14	H	343	366	Right-handed alpha
Helix 15	15	H	368	375	Right-handed alpha
Helix 16	16	H	384	388	Right-handed 310
Helix 17	17	H	395	400	Right-handed alpha
Helix 18	18	H	401	403	Right-handed 310
Helix 19	19	J	343	366	Right-handed alpha
Helix 20	20	J	368	375	Right-handed alpha
Helix 21	21	J	385	388	Right-handed 310
Helix 22	22	J	397	402	Right-handed 310
Helix 23	23	L	343	366	Right-handed alpha
Helix 24	24	L	368	375	Right-handed alpha
Helix 25	25	L	384	388	Right-handed 310
Helix 26	26	L	395	400	Right-handed alpha
Helix 27	27	L	401	403	Right-handed 310
Helix 28	28	N	345	366	Right-handed alpha
Helix 29	29	N	368	375	Right-handed alpha
Helix 30	30	N	384	388	Right-handed 310
Helix 31	31	N	395	403	Right-handed alpha

There are 11 sheets in PDB entry 2F86. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	392	393	first strand
Strand 2	B	376	383	anti-parallel
Strand 3	B	461	470	parallel
Strand 4	B	444	458	anti-parallel
Strand 5	B	426	438	anti-parallel
Strand 6	B	411	422	anti-parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	391	393	first strand
Strand 2	D	376	383	anti-parallel
Strand 3	D	461	470	parallel
Strand 4	D	444	458	anti-parallel
Strand 5	D	426	438	anti-parallel
Strand 6	D	410	414	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	391	393	first strand
Strand 2	D	376	383	anti-parallel
Strand 3	D	461	470	parallel
Strand 4	D	444	458	anti-parallel
Strand 5	D	426	438	anti-parallel
Strand 6	D	418	422	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	392	393	first strand
Strand 2	F	376	383	anti-parallel
Strand 3	F	461	470	parallel
Strand 4	F	444	458	anti-parallel
Strand 5	F	426	438	anti-parallel
Strand 6	F	411	414	anti-parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	392	393	first strand
Strand 2	F	376	383	anti-parallel
Strand 3	F	461	470	parallel
Strand 4	F	444	458	anti-parallel
Strand 5	F	426	438	anti-parallel
Strand 6	F	418	421	anti-parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	392	393	first strand
Strand 2	H	376	383	anti-parallel
Strand 3	H	461	470	parallel
Strand 4	H	444	458	anti-parallel
Strand 5	H	426	438	anti-parallel
Strand 6	H	411	421	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	391	392	first strand
Strand 2	J	376	383	anti-parallel
Strand 3	J	461	470	parallel
Strand 4	J	444	458	anti-parallel
Strand 5	J	426	438	anti-parallel
Strand 6	J	411	422	anti-parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	392	393	first strand
Strand 2	L	376	383	anti-parallel
Strand 3	L	461	470	parallel
Strand 4	L	444	458	anti-parallel
Strand 5	L	426	438	anti-parallel
Strand 6	L	411	414	anti-parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	392	393	first strand
Strand 2	L	376	383	anti-parallel
Strand 3	L	461	470	parallel
Strand 4	L	444	458	anti-parallel
Strand 5	L	426	438	anti-parallel
Strand 6	L	418	421	anti-parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	392	393	first strand
Strand 2	N	376	383	anti-parallel
Strand 3	N	461	470	parallel
Strand 4	N	445	458	anti-parallel
Strand 5	N	426	437	anti-parallel
Strand 6	N	410	414	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	392	393	first strand
Strand 2	N	376	383	anti-parallel
Strand 3	N	461	470	parallel
Strand 4	N	445	458	anti-parallel
Strand 5	N	426	437	anti-parallel
Strand 6	N	418	421	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2F86

Analysis of interatomic Contacts of Structural Units in PDB entry:
2F86