Analysis of interatomic Contacts of Structural Units in PDB entry:
2F8A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2F8A entry

There are 2 chains in PDB entry 2F8A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1SER 195
B
 GLN 12SER 195
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 2F8A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 16Right-handed 310
Helix 2
2
A
31 34Right-handed 310
Helix 3
3
A
49 65Right-handed alpha
Helix 4
4
A
86 88Right-handed 310
Helix 5
5
A
89 97Right-handed alpha
Helix 6
6
A
121 131Right-handed alpha
Helix 7
7
A
144 148Right-handed 310
Helix 8
8
A
182 185Right-handed 310
Helix 9
9
A
186 195Right-handed alpha
Helix 10
10
B
13 16Right-handed 310
Helix 11
11
B
31 34Right-handed 310
Helix 12
12
B
49 65Right-handed alpha
Helix 13
13
B
86 88Right-handed 310
Helix 14
14
B
89 97Right-handed alpha
Helix 15
15
B
121 131Right-handed alpha
Helix 16
16
B
144 148Right-handed 310
Helix 17
17
B
182 185Right-handed 310
Helix 18
18
B
186 195Right-handed alpha
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There are 4 sheets in PDB entry 2F8A. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
28 29anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 109first strand
Strand 2
A
69 75parallel
Strand 3
A
37 43parallel
Strand 4
A
164 167anti-parallel
Strand 5
A
173 177anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 19first strand
Strand 2
B
28 29anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 109first strand
Strand 2
B
69 75parallel
Strand 3
B
37 43parallel
Strand 4
B
164 167anti-parallel
Strand 5
B
173 177anti-parallel
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