Analysis of interatomic Contacts of Structural Units in PDB entry:
2F8H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2F8H entry

There is 1 chain in PDB entry 2F8H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0SER 365
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 2F8H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 18Right-handed alpha
Helix 2
2
A
31 40Right-handed alpha
Helix 3
3
A
104 116Right-handed alpha
Helix 4
4
A
136 143Right-handed alpha
Helix 5
5
A
191 210Right-handed alpha
Helix 6
6
A
254 265Right-handed alpha
Helix 7
7
A
286 304Right-handed alpha
Helix 8
8
A
317 324Right-handed alpha
Helix 9
9
A
335 339Right-handed 310
Helix 10
10
A
348 364Right-handed alpha
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There are 5 sheets in PDB entry 2F8H. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 52first strand
Strand 2
A
55 62anti-parallel
Strand 3
A
122 127anti-parallel
Strand 4
A
67 72parallel
Strand 5
A
150 153parallel
Strand 6
A
328 330parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 91first strand
Strand 2
A
95 97anti-parallel
Strand 3
A
345 347anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 162first strand
Strand 2
A
308 309parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 230first strand
Strand 2
A
240 248anti-parallel
Strand 3
A
168 176anti-parallel
Strand 4
A
272 279anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 215first strand
Strand 2
A
218 219anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il