Analysis of interatomic Contacts of Structural Units in PDB entry:
2F8M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2F8M entry

There are 2 chains in PDB entry 2F8M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -3LYS 233
B
 MET 1TYR 235
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2F8M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-3 17Right-handed alpha
Helix 2
2
A
31 44Right-handed alpha
Helix 3
3
A
56 67Right-handed alpha
Helix 4
4
A
102 112Right-handed alpha
Helix 5
5
A
123 125Right-handed 310
Helix 6
6
A
144 153Right-handed alpha
Helix 7
7
A
192 202Right-handed alpha
Helix 8
8
B
1 17Right-handed alpha
Helix 9
9
B
31 45Right-handed alpha
Helix 10
10
B
56 67Right-handed alpha
Helix 11
11
B
102 112Right-handed alpha
Helix 12
12
B
123 125Right-handed 310
Helix 13
13
B
144 154Right-handed alpha
Helix 14
14
B
192 202Right-handed alpha
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There are 8 sheets in PDB entry 2F8M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 54first strand
Strand 2
A
22 25parallel
Strand 3
A
81 84parallel
Strand 4
A
116 121parallel
Strand 5
A
218 222parallel
Strand 6
A
228 232anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 89first strand
Strand 2
A
95 96anti-parallel
Strand 3
A
211 212anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 165first strand
Strand 2
A
180 185anti-parallel
Strand 3
A
136 140anti-parallel
Strand 4
A
206 209anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 168first strand
Strand 2
A
171 172anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 54first strand
Strand 2
B
22 25parallel
Strand 3
B
81 84parallel
Strand 4
B
116 121parallel
Strand 5
B
218 222parallel
Strand 6
B
228 232anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 89first strand
Strand 2
B
95 96anti-parallel
Strand 3
B
211 212anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 165first strand
Strand 2
B
180 185anti-parallel
Strand 3
B
136 140anti-parallel
Strand 4
B
206 209anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 168first strand
Strand 2
B
171 172anti-parallel
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