Analysis of interatomic Contacts of Structural Units in PDB entry:
2F8S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2F8S entry

There are 4 chains in PDB entry 2F8S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 A 1 U 22
D
 A 1 U 22
A
 LYS 3LEU 706
B
 LYS 3LEU 706
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 45 helices in PDB entry 2F8S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 33Right-handed 310
Helix 2
2
A
34 47Right-handed alpha
Helix 3
3
A
93 109Right-handed alpha
Helix 4
4
A
109 126Right-handed alpha
Helix 5
5
A
168 176Right-handed alpha
Helix 6
6
A
203 205Right-handed 310
Helix 7
7
A
206 217Right-handed alpha
Helix 8
8
A
219 232Right-handed alpha
Helix 9
9
A
234 239Right-handed alpha
Helix 10
10
A
265 277Right-handed alpha
Helix 11
11
A
279 299Right-handed alpha
Helix 12
12
A
335 343Right-handed alpha
Helix 13
13
A
366 382Right-handed alpha
Helix 14
14
A
399 414Right-handed alpha
Helix 15
15
A
437 449Right-handed alpha
Helix 16
16
A
458 464Right-handed alpha
Helix 17
17
A
465 482Right-handed alpha
Helix 18
18
A
542 558Right-handed alpha
Helix 19
19
A
575 590Right-handed alpha
Helix 20
20
A
651 663Right-handed alpha
Helix 21
21
A
664 667Right-handed 310
Helix 22
22
A
681 690Right-handed alpha
Helix 23
23
B
31 33Right-handed 310
Helix 24
24
B
34 47Right-handed alpha
Helix 25
25
B
93 109Right-handed alpha
Helix 26
26
B
109 127Right-handed alpha
Helix 27
27
B
168 176Right-handed alpha
Helix 28
28
B
208 217Right-handed alpha
Helix 29
29
B
219 232Right-handed alpha
Helix 30
30
B
232 239Right-handed alpha
Helix 31
31
B
265 277Right-handed alpha
Helix 32
32
B
279 299Right-handed alpha
Helix 33
33
B
336 343Right-handed alpha
Helix 34
34
B
365 382Right-handed alpha
Helix 35
35
B
399 406Right-handed alpha
Helix 36
36
B
406 413Right-handed alpha
Helix 37
37
B
437 449Right-handed alpha
Helix 38
38
B
459 464Right-handed alpha
Helix 39
39
B
465 481Right-handed alpha
Helix 40
40
B
539 541Right-handed 310
Helix 41
41
B
542 558Right-handed alpha
Helix 42
42
B
575 589Right-handed alpha
Helix 43
43
B
651 664Right-handed alpha
Helix 44
44
B
665 667Right-handed 310
Helix 45
45
B
681 692Right-handed alpha
Back to top of page

There are 16 sheets in PDB entry 2F8S. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
135 147anti-parallel
Strand 3
A
153 164anti-parallel
Strand 4
A
5 14anti-parallel
Strand 5
A
303 311anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
135 147anti-parallel
Strand 3
A
153 164anti-parallel
Strand 4
A
5 14anti-parallel
Strand 5
A
606 608anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
56 59anti-parallel
Strand 3
A
20 26anti-parallel
Strand 4
A
77 87anti-parallel
Strand 5
A
67 71anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 244first strand
Strand 2
A
194 201anti-parallel
Strand 3
A
184 187anti-parallel
Strand 4
A
255 257anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 323first strand
Strand 2
A
487 488anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 396first strand
Strand 2
A
351 360parallel
Strand 3
A
419 424parallel
Strand 4
A
453 457parallel
Back to list of sheets
Back to top of page

There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
617 620first strand
Strand 2
A
624 627anti-parallel
Strand 3
A
641 647anti-parallel
Strand 4
A
592 599anti-parallel
Strand 5
A
565 570parallel
Strand 6
A
497 504parallel
Strand 7
A
515 523anti-parallel
Strand 8
A
528 536anti-parallel
Strand 9
A
697 700anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
507 508first strand
Strand 2
A
511 512anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 147first strand
Strand 2
B
153 165anti-parallel
Strand 3
B
5 14anti-parallel
Strand 4
B
303 311anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 147first strand
Strand 2
B
153 165anti-parallel
Strand 3
B
5 14anti-parallel
Strand 4
B
606 608anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 53first strand
Strand 2
B
56 59anti-parallel
Strand 3
B
20 26anti-parallel
Strand 4
B
77 87anti-parallel
Strand 5
B
67 71anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 187first strand
Strand 2
B
255 257anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
200 201first strand
Strand 2
B
240 243anti-parallel
Strand 3
B
249 251anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
314 315first strand
Strand 2
B
616 620anti-parallel
Strand 3
B
624 627anti-parallel
Strand 4
B
641 647anti-parallel
Strand 5
B
592 599anti-parallel
Strand 6
B
565 571parallel
Strand 7
B
497 507parallel
Strand 8
B
512 522anti-parallel
Strand 9
B
528 535anti-parallel
Strand 10
B
697 700anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
329 331first strand
Strand 2
B
321 323anti-parallel
Strand 3
B
487 488anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
386 396first strand
Strand 2
B
351 360parallel
Strand 3
B
419 424parallel
Strand 4
B
453 457parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il