Analysis of interatomic Contacts of Structural Units in PDB entry:
2F8T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2F8T entry

There are 4 chains in PDB entry 2F8T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 A 1 U 26
D
 A 1 U 24
A
 LYS 3LEU 706
B
 LYS 3LEU 706
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 2F8T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 33Right-handed 310
Helix 2
2
A
34 47Right-handed alpha
Helix 3
3
A
93 109Right-handed alpha
Helix 4
4
A
109 123Right-handed alpha
Helix 5
5
A
168 175Right-handed alpha
Helix 6
6
A
203 205Right-handed 310
Helix 7
7
A
207 216Right-handed alpha
Helix 8
8
A
219 232Right-handed alpha
Helix 9
9
A
232 239Right-handed alpha
Helix 10
10
A
265 277Right-handed alpha
Helix 11
11
A
279 299Right-handed alpha
Helix 12
12
A
336 343Right-handed alpha
Helix 13
13
A
366 382Right-handed alpha
Helix 14
14
A
399 413Right-handed alpha
Helix 15
15
A
437 448Right-handed alpha
Helix 16
16
A
458 464Right-handed alpha
Helix 17
17
A
465 481Right-handed alpha
Helix 18
18
A
541 558Right-handed alpha
Helix 19
19
A
575 589Right-handed alpha
Helix 20
20
A
651 663Right-handed alpha
Helix 21
21
A
664 667Right-handed 310
Helix 22
22
A
681 691Right-handed alpha
Helix 23
23
B
31 33Right-handed 310
Helix 24
24
B
34 47Right-handed alpha
Helix 25
25
B
93 109Right-handed alpha
Helix 26
26
B
109 121Right-handed alpha
Helix 27
27
B
122 127Right-handed alpha
Helix 28
28
B
168 176Right-handed alpha
Helix 29
29
B
208 217Right-handed alpha
Helix 30
30
B
219 232Right-handed alpha
Helix 31
31
B
232 239Right-handed alpha
Helix 32
32
B
268 277Right-handed alpha
Helix 33
33
B
279 299Right-handed alpha
Helix 34
34
B
336 343Right-handed alpha
Helix 35
35
B
366 382Right-handed alpha
Helix 36
36
B
399 414Right-handed alpha
Helix 37
37
B
437 449Right-handed alpha
Helix 38
38
B
458 464Right-handed alpha
Helix 39
39
B
465 482Right-handed alpha
Helix 40
40
B
542 558Right-handed alpha
Helix 41
41
B
575 589Right-handed alpha
Helix 42
42
B
651 663Right-handed alpha
Helix 43
43
B
664 667Right-handed 310
Helix 44
44
B
681 690Right-handed alpha
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There are 17 sheets in PDB entry 2F8T. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 129first strand
Strand 2
A
134 147anti-parallel
Strand 3
A
153 165anti-parallel
Strand 4
A
5 14anti-parallel
Strand 5
A
303 311anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 129first strand
Strand 2
A
134 147anti-parallel
Strand 3
A
153 165anti-parallel
Strand 4
A
5 14anti-parallel
Strand 5
A
606 608anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
56 59anti-parallel
Strand 3
A
20 26anti-parallel
Strand 4
A
77 87anti-parallel
Strand 5
A
67 71anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 195first strand
Strand 2
A
184 187anti-parallel
Strand 3
A
255 257anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 201first strand
Strand 2
A
240 243anti-parallel
Strand 3
A
249 251anti-parallel
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There are 10 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 315first strand
Strand 2
A
616 620anti-parallel
Strand 3
A
624 627anti-parallel
Strand 4
A
641 647anti-parallel
Strand 5
A
592 599anti-parallel
Strand 6
A
565 570parallel
Strand 7
A
497 508parallel
Strand 8
A
511 522anti-parallel
Strand 9
A
528 536anti-parallel
Strand 10
A
697 700anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 331first strand
Strand 2
A
321 323anti-parallel
Strand 3
A
487 488anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 391first strand
Strand 2
A
351 360parallel
Strand 3
A
394 396parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 391first strand
Strand 2
A
351 360parallel
Strand 3
A
419 424parallel
Strand 4
A
453 457parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
310 311first strand
Strand 2
B
6 7anti-parallel
Strand 3
B
606 607anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 147first strand
Strand 2
B
153 165anti-parallel
Strand 3
B
9 14anti-parallel
Strand 4
B
303 305anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 53first strand
Strand 2
B
56 59anti-parallel
Strand 3
B
20 26anti-parallel
Strand 4
B
77 87anti-parallel
Strand 5
B
67 71anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 187first strand
Strand 2
B
255 257anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 201first strand
Strand 2
B
240 244anti-parallel
Strand 3
B
249 251anti-parallel
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There are 10 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
314 315first strand
Strand 2
B
616 619anti-parallel
Strand 3
B
624 627anti-parallel
Strand 4
B
641 647anti-parallel
Strand 5
B
592 599anti-parallel
Strand 6
B
565 571parallel
Strand 7
B
497 507parallel
Strand 8
B
512 523anti-parallel
Strand 9
B
528 535anti-parallel
Strand 10
B
697 700anti-parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
329 331first strand
Strand 2
B
321 323anti-parallel
Strand 3
B
487 488anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
386 395first strand
Strand 2
B
351 359parallel
Strand 3
B
419 424parallel
Strand 4
B
453 457parallel
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