Analysis of interatomic Contacts of Structural Units in PDB entry:
2F8V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2F8V entry

There are 6 chains in PDB entry 2F8V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2GLY 195
B
 MET 1THR 197
T
 MET 1VAL 88
C
 GLN 4GLN 194
D
 THR 2GLN 194
Y
 MET 1VAL 88
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 2F8V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
71 75Right-handed 310
Helix 2
2
A
167 171Right-handed 310
Helix 3
3
B
71 75Right-handed 310
Helix 4
4
B
167 171Right-handed 310
Helix 5
5
C
71 75Right-handed 310
Helix 6
6
C
167 171Right-handed 310
Helix 7
7
D
71 75Right-handed 310
Helix 8
8
D
167 171Right-handed 310
Helix 9
9
Y
34 37Right-handed 310
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There are 19 sheets in PDB entry 2F8V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 10first strand
Strand 2
A
23 32anti-parallel
Strand 3
A
62 67anti-parallel
Strand 4
A
55 59anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 18first strand
Strand 2
A
87 98parallel
Strand 3
A
76 84anti-parallel
Strand 4
A
36 41anti-parallel
Strand 5
A
44 45anti-parallel
Strand 6
A
36 41anti-parallel
Strand 7
A
76 84anti-parallel
Strand 8
A
87 98anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
4 14first strand
Strand 2
T
19 44anti-parallel
Strand 3
B
183 194anti-parallel
Strand 4
B
172 180anti-parallel
Strand 5
B
134 139anti-parallel
Strand 6
B
142 143anti-parallel
Strand 7
B
134 139anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 180first strand
Strand 2
B
183 194anti-parallel
Strand 3
B
113 116parallel
Strand 4
B
183 194parallel
Strand 5
T
19 44anti-parallel
Strand 6
B
87 98anti-parallel
Strand 7
B
76 84anti-parallel
Strand 8
B
36 41anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
36 41anti-parallel
Strand 3
B
76 84anti-parallel
Strand 4
B
87 98anti-parallel
Strand 5
B
15 18parallel
Strand 6
B
87 98parallel
Strand 7
T
19 44anti-parallel
Strand 8
T
49 62anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
68 73first strand
Strand 2
T
79 82anti-parallel
Strand 3
T
68 73anti-parallel
Strand 4
T
49 62anti-parallel
Strand 5
A
183 194anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 180first strand
Strand 2
A
134 139anti-parallel
Strand 3
A
142 143anti-parallel
Strand 4
A
134 139anti-parallel
Strand 5
A
172 180anti-parallel
Strand 6
A
183 194anti-parallel
Strand 7
A
113 116parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 108first strand
Strand 2
A
121 130anti-parallel
Strand 3
A
158 163anti-parallel
Strand 4
A
150 155anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 10first strand
Strand 2
B
23 32anti-parallel
Strand 3
B
62 67anti-parallel
Strand 4
B
55 59anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 108first strand
Strand 2
B
121 130anti-parallel
Strand 3
B
158 163anti-parallel
Strand 4
B
151 155anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
7 10first strand
Strand 2
C
23 30anti-parallel
Strand 3
C
62 67anti-parallel
Strand 4
C
55 59anti-parallel
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There are 9 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 18first strand
Strand 2
C
87 98parallel
Strand 3
C
76 84anti-parallel
Strand 4
C
36 41anti-parallel
Strand 5
C
44 45anti-parallel
Strand 6
C
36 41anti-parallel
Strand 7
C
76 84anti-parallel
Strand 8
C
87 98anti-parallel
Strand 9
Y
4 14anti-parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
19 32first strand
Strand 2
Y
58 62anti-parallel
Strand 3
Y
68 73anti-parallel
Strand 4
Y
78 82anti-parallel
Strand 5
Y
68 73anti-parallel
Strand 6
Y
58 62anti-parallel
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There are 7 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
19 32first strand
Strand 2
D
183 194anti-parallel
Strand 3
D
113 116parallel
Strand 4
D
183 194parallel
Strand 5
D
172 180anti-parallel
Strand 6
D
134 139anti-parallel
Strand 7
D
142 143anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
102 108first strand
Strand 2
C
121 130anti-parallel
Strand 3
C
158 163anti-parallel
Strand 4
C
150 155anti-parallel
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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
113 116first strand
Strand 2
C
183 194parallel
Strand 3
Y
49 55anti-parallel
Strand 4
Y
39 44anti-parallel
Strand 5
D
87 98anti-parallel
Strand 6
D
15 18parallel
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There are 10 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
142 143first strand
Strand 2
C
134 139anti-parallel
Strand 3
C
172 180anti-parallel
Strand 4
C
183 194anti-parallel
Strand 5
Y
49 55anti-parallel
Strand 6
Y
39 44anti-parallel
Strand 7
D
87 98anti-parallel
Strand 8
D
76 84anti-parallel
Strand 9
D
36 41anti-parallel
Strand 10
D
44 45anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
7 10first strand
Strand 2
D
23 30anti-parallel
Strand 3
D
62 67anti-parallel
Strand 4
D
55 59anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
102 108first strand
Strand 2
D
121 130anti-parallel
Strand 3
D
158 163anti-parallel
Strand 4
D
150 155anti-parallel
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