Analysis of interatomic Contacts of Structural Units in PDB entry:
2F8Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2F8Y entry

There are 2 chains in PDB entry 2F8Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1909PRO 2123
B
 ALA 1909TYR 2117
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 2F8Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1931 1939Right-handed alpha
Helix 2
2
A
1941 1951Right-handed alpha
Helix 3
3
A
1964 1972Right-handed alpha
Helix 4
4
A
1974 1984Right-handed alpha
Helix 5
5
A
1998 2007Right-handed alpha
Helix 6
6
A
2008 2018Right-handed alpha
Helix 7
7
A
2031 2039Right-handed alpha
Helix 8
8
A
2041 2051Right-handed alpha
Helix 9
9
A
2064 2073Right-handed alpha
Helix 10
10
A
2074 2084Right-handed alpha
Helix 11
11
A
2097 2105Right-handed alpha
Helix 12
12
A
2107 2117Right-handed alpha
Helix 13
13
B
1912 1917Right-handed alpha
Helix 14
14
B
1931 1939Right-handed alpha
Helix 15
15
B
1941 1951Right-handed alpha
Helix 16
16
B
1964 1973Right-handed alpha
Helix 17
17
B
1974 1983Right-handed alpha
Helix 18
18
B
1998 2007Right-handed alpha
Helix 19
19
B
2008 2018Right-handed alpha
Helix 20
20
B
2031 2039Right-handed alpha
Helix 21
21
B
2041 2051Right-handed alpha
Helix 22
22
B
2064 2073Right-handed alpha
Helix 23
23
B
2074 2084Right-handed alpha
Helix 24
24
B
2097 2105Right-handed alpha
Helix 25
25
B
2107 2117Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 2F8Y.

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1911 1912first strand
Strand 2
A
1915 1916anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il