Analysis of interatomic Contacts of Structural Units in PDB entry:
2F9C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2F9C entry

There are 2 chains in PDB entry 2F9C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3LEU 322
B
 LYS 3HIS 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There is 1 helix in PDB entry 2F9C. Click on helix number for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
323 327Right-handed 310
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There are 12 sheets in PDB entry 2F9C. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
21 31anti-parallel
Strand 3
A
11 16anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
21 31anti-parallel
Strand 3
A
43 47anti-parallel
Strand 4
A
67 68parallel
Strand 5
A
85 86parallel
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There are 14 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
79 80parallel
Strand 3
A
97 98parallel
Strand 4
A
114 116parallel
Strand 5
A
131 133parallel
Strand 6
A
159 161parallel
Strand 7
A
176 178parallel
Strand 8
A
193 195parallel
Strand 9
A
215 217parallel
Strand 10
A
239 241parallel
Strand 11
A
257 259parallel
Strand 12
A
276 278parallel
Strand 13
A
294 296parallel
Strand 14
A
316 317parallel
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There are 13 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 74first strand
Strand 2
A
91 92parallel
Strand 3
A
107 109parallel
Strand 4
A
124 126parallel
Strand 5
A
153 154parallel
Strand 6
A
170 171parallel
Strand 7
A
187 188parallel
Strand 8
A
209 210parallel
Strand 9
A
233 234parallel
Strand 10
A
249 252parallel
Strand 11
A
268 271parallel
Strand 12
A
286 289parallel
Strand 13
A
309 311parallel
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There are 11 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 103first strand
Strand 2
A
119 120parallel
Strand 3
A
137 138parallel
Strand 4
A
164 165parallel
Strand 5
A
181 182parallel
Strand 6
A
203 204parallel
Strand 7
A
227 228parallel
Strand 8
A
244 246parallel
Strand 9
A
263 265parallel
Strand 10
A
281 283parallel
Strand 11
A
303 305parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 6first strand
Strand 2
B
21 31anti-parallel
Strand 3
B
11 16anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 6first strand
Strand 2
B
21 31anti-parallel
Strand 3
B
43 47anti-parallel
Strand 4
B
67 68parallel
Strand 5
B
85 86parallel
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There are 15 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 61first strand
Strand 2
B
79 80parallel
Strand 3
B
97 98parallel
Strand 4
B
114 115parallel
Strand 5
B
131 133parallel
Strand 6
B
159 161parallel
Strand 7
B
176 178parallel
Strand 8
B
193 195parallel
Strand 9
B
215 217parallel
Strand 10
B
240 246parallel
Strand 11
B
227 228parallel
Strand 12
B
202 204parallel
Strand 13
B
180 182parallel
Strand 14
B
164 167parallel
Strand 15
B
137 140parallel
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There are 13 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 61first strand
Strand 2
B
79 80parallel
Strand 3
B
97 98parallel
Strand 4
B
114 115parallel
Strand 5
B
131 133parallel
Strand 6
B
159 161parallel
Strand 7
B
176 178parallel
Strand 8
B
193 195parallel
Strand 9
B
215 217parallel
Strand 10
B
240 246parallel
Strand 11
B
258 265parallel
Strand 12
B
282 283parallel
Strand 13
B
304 305parallel
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There are 13 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 74first strand
Strand 2
B
91 92parallel
Strand 3
B
108 109parallel
Strand 4
B
125 126parallel
Strand 5
B
153 154parallel
Strand 6
B
170 171parallel
Strand 7
B
187 188parallel
Strand 8
B
209 210parallel
Strand 9
B
233 234parallel
Strand 10
B
250 252parallel
Strand 11
B
268 271parallel
Strand 12
B
286 289parallel
Strand 13
B
309 311parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 103first strand
Strand 2
B
119 120parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
276 278first strand
Strand 2
B
294 296parallel
Strand 3
B
316 317parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il