Analysis of interatomic Contacts of Structural Units in PDB entry:
2FDC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2FDC entry

There are 4 chains in PDB entry 2FDC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 C 1 A 19
D
 C 15 A 19
A
 VAL 1ASP 594
B
 VAL 1ARG 593
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 2FDC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 30Right-handed alpha
Helix 2
2
A
45 57Right-handed alpha
Helix 3
3
A
66 81Right-handed alpha
Helix 4
4
A
116 133Right-handed alpha
Helix 5
5
A
142 145Right-handed 310
Helix 6
6
A
150 156Right-handed alpha
Helix 7
7
A
252 276Right-handed alpha
Helix 8
8
A
279 301Right-handed alpha
Helix 9
9
A
305 308Right-handed 310
Helix 10
10
A
309 314Right-handed alpha
Helix 11
11
A
326 329Right-handed 310
Helix 12
12
A
339 364Right-handed alpha
Helix 13
13
A
368 374Right-handed 310
Helix 14
14
A
378 386Right-handed alpha
Helix 15
15
A
397 403Right-handed alpha
Helix 16
16
A
429 444Right-handed alpha
Helix 17
17
A
454 468Right-handed alpha
Helix 18
18
A
483 494Right-handed alpha
Helix 19
19
A
530 540Right-handed alpha
Helix 20
20
A
557 581Right-handed alpha
Helix 21
21
B
16 30Right-handed alpha
Helix 22
22
B
45 57Right-handed alpha
Helix 23
23
B
66 81Right-handed alpha
Helix 24
24
B
117 133Right-handed alpha
Helix 25
25
B
142 145Right-handed 310
Helix 26
26
B
150 157Right-handed alpha
Helix 27
27
B
170 179Right-handed alpha
Helix 28
28
B
252 277Right-handed alpha
Helix 29
29
B
279 301Right-handed alpha
Helix 30
30
B
305 308Right-handed 310
Helix 31
31
B
309 314Right-handed alpha
Helix 32
32
B
326 329Right-handed 310
Helix 33
33
B
339 364Right-handed alpha
Helix 34
34
B
368 374Right-handed 310
Helix 35
35
B
378 385Right-handed alpha
Helix 36
36
B
397 404Right-handed alpha
Helix 37
37
B
429 444Right-handed alpha
Helix 38
38
B
454 469Right-handed alpha
Helix 39
39
B
487 493Right-handed alpha
Helix 40
40
B
530 539Right-handed alpha
Helix 41
41
B
540 542Right-handed 310
Helix 42
42
B
557 582Right-handed alpha
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There are 12 sheets in PDB entry 2FDC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 89first strand
Strand 2
A
136 140parallel
Strand 3
A
60 63parallel
Strand 4
A
334 338parallel
Strand 5
A
388 392parallel
Strand 6
A
34 39parallel
Strand 7
A
408 410parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 97first strand
Strand 2
A
112 115anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 102first strand
Strand 2
A
107 109anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
323 324anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 425first strand
Strand 2
A
548 552parallel
Strand 3
A
514 520parallel
Strand 4
A
447 451parallel
Strand 5
A
498 501parallel
Strand 6
A
472 474parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 89first strand
Strand 2
B
136 140parallel
Strand 3
B
60 63parallel
Strand 4
B
334 338parallel
Strand 5
B
388 392parallel
Strand 6
B
34 39parallel
Strand 7
B
408 410parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 97first strand
Strand 2
B
112 115anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 102first strand
Strand 2
B
107 109anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 148first strand
Strand 2
B
323 324anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 162first strand
Strand 2
B
240 243anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 183first strand
Strand 2
B
192 195parallel
Strand 3
B
200 203anti-parallel
Strand 4
B
212 217anti-parallel
Strand 5
B
220 225anti-parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
421 425first strand
Strand 2
B
548 552parallel
Strand 3
B
514 519parallel
Strand 4
B
447 451parallel
Strand 5
B
498 501parallel
Strand 6
B
472 474parallel
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