Analysis of interatomic Contacts of Structural Units in PDB entry:
2FFJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2FFJ entry

There are 2 chains in PDB entry 2FFJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 7GLU 288
B
 CYS 7GLU 288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 2FFJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 23Right-handed alpha
Helix 2
2
A
25 43Right-handed alpha
Helix 3
3
A
50 66Right-handed alpha
Helix 4
4
A
71 96Right-handed alpha
Helix 5
5
A
98 110Right-handed alpha
Helix 6
6
A
111 113Right-handed 310
Helix 7
7
A
122 138Right-handed alpha
Helix 8
8
A
143 151Right-handed alpha
Helix 9
9
A
163 177Right-handed alpha
Helix 10
10
A
196 203Right-handed alpha
Helix 11
11
A
204 209Right-handed alpha
Helix 12
12
A
223 227Right-handed 310
Helix 13
13
A
228 238Right-handed alpha
Helix 14
14
A
245 253Right-handed alpha
Helix 15
15
A
268 276Right-handed alpha
Helix 16
16
B
7 23Right-handed alpha
Helix 17
17
B
25 43Right-handed alpha
Helix 18
18
B
50 66Right-handed alpha
Helix 19
19
B
71 96Right-handed alpha
Helix 20
20
B
98 110Right-handed alpha
Helix 21
21
B
123 138Right-handed alpha
Helix 22
22
B
143 151Right-handed alpha
Helix 23
23
B
163 177Right-handed alpha
Helix 24
24
B
196 203Right-handed alpha
Helix 25
25
B
204 209Right-handed alpha
Helix 26
26
B
223 227Right-handed 310
Helix 27
27
B
228 238Right-handed alpha
Helix 28
28
B
245 253Right-handed alpha
Helix 29
29
B
268 276Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 2FFJ. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 142first strand
Strand 2
A
282 287parallel
Strand 3
A
260 265anti-parallel
Strand 4
A
240 244parallel
Strand 5
A
154 158parallel
Strand 6
A
181 186parallel
Strand 7
A
211 214parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 142first strand
Strand 2
B
282 287parallel
Strand 3
B
260 265anti-parallel
Strand 4
B
240 244parallel
Strand 5
B
154 158parallel
Strand 6
B
181 186parallel
Strand 7
B
211 214parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il