Analysis of interatomic Contacts of Structural Units in PDB entry:
2FIY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2FIY entry

There are 2 chains in PDB entry 2FIY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 19GLY 308
B
 PRO 18GLY 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 2FIY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 41Right-handed alpha
Helix 2
2
A
45 64Right-handed alpha
Helix 3
3
A
73 83Right-handed alpha
Helix 4
4
A
89 97Right-handed alpha
Helix 5
5
A
99 109Right-handed alpha
Helix 6
6
A
115 128Right-handed alpha
Helix 7
7
A
129 142Right-handed alpha
Helix 8
8
A
144 148Right-handed 310
Helix 9
9
A
149 151Right-handed 310
Helix 10
10
A
152 170Right-handed alpha
Helix 11
11
A
275 282Right-handed alpha
Helix 12
12
A
283 293Right-handed alpha
Helix 13
13
B
27 41Right-handed alpha
Helix 14
14
B
45 65Right-handed alpha
Helix 15
15
B
73 83Right-handed alpha
Helix 16
16
B
89 97Right-handed alpha
Helix 17
17
B
99 109Right-handed alpha
Helix 18
18
B
115 128Right-handed alpha
Helix 19
19
B
129 142Right-handed alpha
Helix 20
20
B
143 148Right-handed 310
Helix 21
21
B
149 151Right-handed 310
Helix 22
22
B
152 170Right-handed alpha
Helix 23
23
B
245 249Right-handed 310
Helix 24
24
B
275 282Right-handed alpha
Helix 25
25
B
283 293Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 2FIY. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 22first strand
Strand 2
A
217 219anti-parallel
Strand 3
A
206 211anti-parallel
Strand 4
A
192 198anti-parallel
Strand 5
A
261 267parallel
Strand 6
A
251 254anti-parallel
Strand 7
A
236 237anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 22first strand
Strand 2
A
217 219anti-parallel
Strand 3
A
206 211anti-parallel
Strand 4
A
192 198anti-parallel
Strand 5
A
261 267parallel
Strand 6
A
296 297parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 219first strand
Strand 2
B
206 211anti-parallel
Strand 3
B
192 198anti-parallel
Strand 4
B
261 267parallel
Strand 5
B
251 256anti-parallel
Strand 6
B
235 237anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 219first strand
Strand 2
B
206 211anti-parallel
Strand 3
B
192 198anti-parallel
Strand 4
B
261 267parallel
Strand 5
B
296 297parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il