Analysis of interatomic Contacts of Structural Units in PDB entry:
2FME


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2FME entry

There are 2 chains in PDB entry 2FME (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 17PRO 363
B
 LYS 17LYS 362
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 2FME. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 33Right-handed 310
Helix 2
2
A
77 85Right-handed alpha
Helix 3
3
A
85 95Right-handed alpha
Helix 4
4
A
110 116Right-handed alpha
Helix 5
5
A
120 124Right-handed 310
Helix 6
6
A
126 130Right-handed 310
Helix 7
7
A
134 147Right-handed alpha
Helix 8
8
A
206 208Right-handed 310
Helix 9
9
A
209 228Right-handed alpha
Helix 10
10
A
230 235Right-handed alpha
Helix 11
11
A
268 272Right-handed 310
Helix 12
12
A
289 305Right-handed alpha
Helix 13
13
A
310 313Right-handed 310
Helix 14
14
A
314 320Right-handed alpha
Helix 15
15
A
321 324Right-handed 310
Helix 16
16
A
339 341Right-handed 310
Helix 17
17
A
342 357Right-handed alpha
Helix 18
18
B
29 33Right-handed 310
Helix 19
19
B
77 85Right-handed alpha
Helix 20
20
B
85 95Right-handed alpha
Helix 21
21
B
110 116Right-handed alpha
Helix 22
22
B
120 124Right-handed 310
Helix 23
23
B
126 130Right-handed 310
Helix 24
24
B
134 147Right-handed alpha
Helix 25
25
B
206 208Right-handed 310
Helix 26
26
B
209 228Right-handed alpha
Helix 27
27
B
230 235Right-handed alpha
Helix 28
28
B
268 272Right-handed 310
Helix 29
29
B
289 305Right-handed alpha
Helix 30
30
B
310 313Right-handed 310
Helix 31
31
B
314 320Right-handed alpha
Helix 32
32
B
321 324Right-handed 310
Helix 33
33
B
339 341Right-handed 310
Helix 34
34
B
342 357Right-handed alpha
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There are 5 sheets in PDB entry 2FME. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
20 25parallel
Strand 3
A
329 336parallel
Strand 4
A
98 104parallel
Strand 5
A
258 265parallel
Strand 6
A
236 245anti-parallel
Strand 7
A
154 164anti-parallel
Strand 8
A
167 170anti-parallel
Strand 9
A
181 186anti-parallel
Strand 10
A
194 197anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
20 25parallel
Strand 3
A
329 336parallel
Strand 4
A
98 104parallel
Strand 5
A
258 265parallel
Strand 6
A
236 245anti-parallel
Strand 7
A
154 164anti-parallel
Strand 8
A
202 203anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
49 53anti-parallel
Strand 3
A
62 67anti-parallel
Strand 4
B
62 67anti-parallel
Strand 5
B
49 55anti-parallel
Strand 6
B
41 44anti-parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 72first strand
Strand 2
B
20 25parallel
Strand 3
B
329 336parallel
Strand 4
B
98 104parallel
Strand 5
B
254 265parallel
Strand 6
B
236 248anti-parallel
Strand 7
B
154 164anti-parallel
Strand 8
B
167 170anti-parallel
Strand 9
B
181 186anti-parallel
Strand 10
B
194 197anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 72first strand
Strand 2
B
20 25parallel
Strand 3
B
329 336parallel
Strand 4
B
98 104parallel
Strand 5
B
254 265parallel
Strand 6
B
236 248anti-parallel
Strand 7
B
154 164anti-parallel
Strand 8
B
202 203anti-parallel
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