Analysis of interatomic Contacts of Structural Units in PDB entry:
2FML


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2FML entry

There are 2 chains in PDB entry 2FML (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 3LYS 268
B
 PHE 4THR 269
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 2FML. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 17Right-handed alpha
Helix 2
2
A
19 28Right-handed alpha
Helix 3
3
A
84 98Right-handed alpha
Helix 4
4
A
102 104Right-handed 310
Helix 5
5
A
185 201Right-handed alpha
Helix 6
6
A
205 212Right-handed 310
Helix 7
7
A
216 229Right-handed alpha
Helix 8
8
A
231 235Right-handed 310
Helix 9
9
A
236 245Right-handed alpha
Helix 10
10
A
246 248Right-handed 310
Helix 11
11
B
9 17Right-handed alpha
Helix 12
12
B
19 30Right-handed alpha
Helix 13
13
B
84 98Right-handed alpha
Helix 14
14
B
102 104Right-handed 310
Helix 15
15
B
185 201Right-handed alpha
Helix 16
16
B
205 212Right-handed 310
Helix 17
17
B
216 229Right-handed alpha
Helix 18
18
B
231 235Right-handed 310
Helix 19
19
B
236 245Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 2FML. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 73first strand
Strand 2
A
55 63anti-parallel
Strand 3
A
39 50anti-parallel
Strand 4
A
123 131parallel
Strand 5
A
106 112anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 78first strand
Strand 2
A
39 50anti-parallel
Strand 3
A
55 63anti-parallel
Strand 4
A
143 154anti-parallel
Strand 5
A
157 162anti-parallel
Strand 6
A
165 170anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 73first strand
Strand 2
B
55 62anti-parallel
Strand 3
B
39 50anti-parallel
Strand 4
B
123 134parallel
Strand 5
B
106 112anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 78first strand
Strand 2
B
39 50anti-parallel
Strand 3
B
55 62anti-parallel
Strand 4
B
146 154anti-parallel
Strand 5
B
157 162anti-parallel
Strand 6
B
165 170anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 250first strand
Strand 2
B
265 267anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il