Analysis of interatomic Contacts of Structural Units in PDB entry:
2FNJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2FNJ entry

There are 3 chains in PDB entry 2FNJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 35GLN 251
B
 MET 1GLU 98
C
 MET 17CYS 112
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 2FNJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
38 47Right-handed alpha
Helix 2
2
A
51 58Right-handed alpha
Helix 3
3
A
109 113Right-handed 310
Helix 4
4
A
240 250Right-handed alpha
Helix 5
5
B
23 36Right-handed alpha
Helix 6
6
B
38 40Right-handed 310
Helix 7
7
B
56 61Right-handed alpha
Helix 8
8
C
33 37Right-handed alpha
Helix 9
9
C
39 48Right-handed alpha
Helix 10
10
C
66 85Right-handed alpha
Helix 11
11
C
99 111Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 2FNJ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 65first strand
Strand 2
A
87 93anti-parallel
Strand 3
A
129 131anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 65first strand
Strand 2
A
87 93anti-parallel
Strand 3
A
214 219anti-parallel
Strand 4
A
118 122anti-parallel
Strand 5
A
143 147anti-parallel
Strand 6
A
152 155anti-parallel
Strand 7
A
163 164anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 72first strand
Strand 2
A
75 81anti-parallel
Strand 3
A
225 234anti-parallel
Strand 4
A
101 107anti-parallel
Strand 5
A
180 186anti-parallel
Strand 6
A
191 196anti-parallel
Strand 7
A
199 205anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 50first strand
Strand 2
B
42 46anti-parallel
Strand 3
B
73 79anti-parallel
Strand 4
B
2 9parallel
Strand 5
B
12 19anti-parallel
Strand 6
C
28 32parallel
Strand 7
C
18 22anti-parallel
Strand 8
C
59 61parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il