Analysis of interatomic Contacts of Structural Units in PDB entry:
2FPO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2FPO entry

There are 6 chains in PDB entry 2FPO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 10GLN 192
B
 GLY 10GLN 192
C
 GLY 10GLN 192
D
 GLY 10GLN 192
E
 GLY 10GLN 192
F
 GLY 10GLN 192
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 2FPO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 20Right-handed 310
Helix 2
2
A
36 52Right-handed alpha
Helix 3
3
A
64 73Right-handed alpha
Helix 4
4
A
84 98Right-handed alpha
Helix 5
5
A
109 115Right-handed alpha
Helix 6
6
A
134 145Right-handed alpha
Helix 7
7
A
161 163Right-handed 310
Helix 8
8
B
16 20Right-handed 310
Helix 9
9
B
36 48Right-handed alpha
Helix 10
10
B
64 73Right-handed alpha
Helix 11
11
B
84 99Right-handed alpha
Helix 12
12
B
109 115Right-handed alpha
Helix 13
13
B
134 145Right-handed alpha
Helix 14
14
C
36 48Right-handed alpha
Helix 15
15
C
64 73Right-handed alpha
Helix 16
16
C
84 99Right-handed alpha
Helix 17
17
C
109 115Right-handed alpha
Helix 18
18
C
134 145Right-handed alpha
Helix 19
19
D
16 20Right-handed 310
Helix 20
20
D
36 52Right-handed alpha
Helix 21
21
D
64 73Right-handed alpha
Helix 22
22
D
84 98Right-handed alpha
Helix 23
23
D
109 115Right-handed alpha
Helix 24
24
D
134 145Right-handed alpha
Helix 25
25
D
161 163Right-handed 310
Helix 26
26
E
36 48Right-handed alpha
Helix 27
27
E
64 73Right-handed alpha
Helix 28
28
E
84 99Right-handed alpha
Helix 29
29
E
109 115Right-handed alpha
Helix 30
30
E
134 145Right-handed alpha
Helix 31
31
F
16 20Right-handed 310
Helix 32
32
F
37 47Right-handed alpha
Helix 33
33
F
64 73Right-handed alpha
Helix 34
34
F
84 98Right-handed alpha
Helix 35
35
F
109 115Right-handed alpha
Helix 36
36
F
134 145Right-handed alpha
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There are 11 sheets in PDB entry 2FPO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
A
23 25anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 106first strand
Strand 2
A
77 81parallel
Strand 3
A
55 58parallel
Strand 4
A
121 126parallel
Strand 5
A
148 159parallel
Strand 6
A
182 189anti-parallel
Strand 7
A
171 179anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 13first strand
Strand 2
B
23 25anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 106first strand
Strand 2
B
77 81parallel
Strand 3
B
55 58parallel
Strand 4
B
121 126parallel
Strand 5
B
148 159parallel
Strand 6
B
182 190anti-parallel
Strand 7
B
171 179anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 13first strand
Strand 2
C
23 25anti-parallel
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There are 14 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
103 107first strand
Strand 2
C
77 82parallel
Strand 3
C
55 58parallel
Strand 4
C
121 126parallel
Strand 5
C
148 159parallel
Strand 6
C
182 189anti-parallel
Strand 7
C
171 179anti-parallel
Strand 8
F
171 179parallel
Strand 9
F
182 189anti-parallel
Strand 10
F
148 159anti-parallel
Strand 11
F
121 126parallel
Strand 12
F
55 58parallel
Strand 13
F
77 81parallel
Strand 14
F
103 106parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 13first strand
Strand 2
D
23 25anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
103 107first strand
Strand 2
D
77 82parallel
Strand 3
D
55 58parallel
Strand 4
D
121 126parallel
Strand 5
D
148 159parallel
Strand 6
D
182 189anti-parallel
Strand 7
D
171 179anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 13first strand
Strand 2
E
23 25anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
103 107first strand
Strand 2
E
77 82parallel
Strand 3
E
55 58parallel
Strand 4
E
121 126parallel
Strand 5
E
148 159parallel
Strand 6
E
182 190anti-parallel
Strand 7
E
171 179anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
11 13first strand
Strand 2
F
23 25anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il