Analysis of interatomic Contacts of Structural Units in PDB entry:
2FUD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2FUD entry

There are 2 chains in PDB entry 2FUD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 0ILE 218
B
 LEU 1ILE 218
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 2FUD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 11Right-handed 310
Helix 2
2
A
24 43Right-handed alpha
Helix 3
3
A
49 57Right-handed alpha
Helix 4
4
A
1057 59Right-handed 310
Helix 5
5
A
61 65Right-handed 310
Helix 6
6
A
67 82Right-handed alpha
Helix 7
7
A
102 104Right-handed 310
Helix 8
8
A
120 131Right-handed alpha
Helix 9
9
A
138 148Right-handed alpha
Helix 10
10
A
2203 6203Right-handed 310
Helix 11
11
B
8 11Right-handed 310
Helix 12
12
B
24 43Right-handed alpha
Helix 13
13
B
49 57Right-handed alpha
Helix 14
14
B
1057 59Right-handed 310
Helix 15
15
B
61 65Right-handed 310
Helix 16
16
B
67 82Right-handed alpha
Helix 17
17
B
102 104Right-handed 310
Helix 18
18
B
120 131Right-handed alpha
Helix 19
19
B
138 148Right-handed alpha
Helix 20
20
B
2203 6203Right-handed 310
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There are 8 sheets in PDB entry 2FUD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
159 1174anti-parallel
Strand 3
A
3131 134anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
159 1174anti-parallel
Strand 3
A
4174 9274anti-parallel
Strand 4
A
196 200anti-parallel
Strand 5
A
152 153parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 85first strand
Strand 2
A
106 108anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 115first strand
Strand 2
A
207 217anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
159 1174anti-parallel
Strand 3
B
3131 134anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
159 1174anti-parallel
Strand 3
B
4174 9274anti-parallel
Strand 4
B
196 200anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 85first strand
Strand 2
B
106 108anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 115first strand
Strand 2
B
207 217anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il