Analysis of interatomic Contacts of Structural Units in PDB entry:
2FVG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2FVG entry

There is 1 chain in PDB entry 2FVG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0SER 339
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 2FVG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 9Right-handed alpha
Helix 2
2
A
16 28Right-handed alpha
Helix 3
3
A
29 31Right-handed 310
Helix 4
4
A
86 90Right-handed 310
Helix 5
5
A
133 139Right-handed alpha
Helix 6
6
A
164 180Right-handed alpha
Helix 7
7
A
203 211Right-handed alpha
Helix 8
8
A
254 268Right-handed alpha
Helix 9
9
A
315 332Right-handed alpha
Helix 10
10
A
332 337Right-handed alpha
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There are 3 sheets in PDB entry 2FVG. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 36first strand
Strand 2
A
42 46anti-parallel
Strand 3
A
186 193anti-parallel
Strand 4
A
50 60parallel
Strand 5
A
214 223parallel
Strand 6
A
296 305parallel
Strand 7
A
311 314anti-parallel
Strand 8
A
159 162anti-parallel
Strand 9
A
154 156anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 36first strand
Strand 2
A
42 46anti-parallel
Strand 3
A
186 193anti-parallel
Strand 4
A
50 60parallel
Strand 5
A
214 223parallel
Strand 6
A
296 305parallel
Strand 7
A
243 244anti-parallel
Strand 8
A
273 274parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 71first strand
Strand 2
A
77 82anti-parallel
Strand 3
A
125 128anti-parallel
Strand 4
A
100 106anti-parallel
Strand 5
A
94 97anti-parallel
Strand 6
A
146 149anti-parallel
Strand 7
A
65 71anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il