Analysis of interatomic Contacts of Structural Units in PDB entry:
2FVM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2FVM entry

There are 8 chains in PDB entry 2FVM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2VAL 166
A
 MET 168GLU 541
B
 PRO 2VAL 166
B
 MET 168GLU 541
C
 PRO 2VAL 166
C
 MET 168GLU 541
D
 PRO 2VAL 166
D
 MET 168SER 542
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 89 helices in PDB entry 2FVM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 41Right-handed 310
Helix 2
2
A
78 89Right-handed alpha
Helix 3
3
A
108 122Right-handed alpha
Helix 4
4
A
142 162Right-handed alpha
Helix 5
5
A
178 192Right-handed alpha
Helix 6
6
A
202 216Right-handed alpha
Helix 7
7
A
222 227Right-handed alpha
Helix 8
8
A
229 247Right-handed alpha
Helix 9
9
A
258 272Right-handed alpha
Helix 10
10
A
280 286Right-handed alpha
Helix 11
11
A
287 292Right-handed 310
Helix 12
12
A
307 311Right-handed 310
Helix 13
13
A
323 329Right-handed 310
Helix 14
14
A
339 349Right-handed alpha
Helix 15
15
A
372 375Right-handed 310
Helix 16
16
A
379 382Right-handed 310
Helix 17
17
A
386 390Right-handed 310
Helix 18
18
A
399 408Right-handed alpha
Helix 19
19
A
416 425Right-handed alpha
Helix 20
20
A
425 432Right-handed alpha
Helix 21
21
A
471 475Right-handed 310
Helix 22
22
A
510 513Right-handed 310
Helix 23
23
B
39 41Right-handed 310
Helix 24
24
B
78 89Right-handed alpha
Helix 25
25
B
110 122Right-handed alpha
Helix 26
26
B
142 162Right-handed alpha
Helix 27
27
B
178 192Right-handed alpha
Helix 28
28
B
202 216Right-handed alpha
Helix 29
29
B
222 227Right-handed alpha
Helix 30
30
B
229 247Right-handed alpha
Helix 31
31
B
258 272Right-handed alpha
Helix 32
32
B
280 286Right-handed alpha
Helix 33
33
B
287 292Right-handed 310
Helix 34
34
B
307 311Right-handed 310
Helix 35
35
B
323 329Right-handed 310
Helix 36
36
B
339 349Right-handed alpha
Helix 37
37
B
372 375Right-handed 310
Helix 38
38
B
379 382Right-handed 310
Helix 39
39
B
386 390Right-handed 310
Helix 40
40
B
399 408Right-handed alpha
Helix 41
41
B
416 425Right-handed alpha
Helix 42
42
B
425 432Right-handed alpha
Helix 43
43
B
471 475Right-handed 310
Helix 44
44
B
510 513Right-handed 310
Helix 45
45
C
39 41Right-handed 310
Helix 46
46
C
78 89Right-handed alpha
Helix 47
47
C
108 122Right-handed alpha
Helix 48
48
C
142 162Right-handed alpha
Helix 49
49
C
178 192Right-handed alpha
Helix 50
50
C
202 216Right-handed alpha
Helix 51
51
C
222 227Right-handed alpha
Helix 52
52
C
229 247Right-handed alpha
Helix 53
53
C
258 272Right-handed alpha
Helix 54
54
C
280 286Right-handed alpha
Helix 55
55
C
287 292Right-handed 310
Helix 56
56
C
307 311Right-handed 310
Helix 57
57
C
323 329Right-handed 310
Helix 58
58
C
339 349Right-handed alpha
Helix 59
59
C
372 375Right-handed 310
Helix 60
60
C
379 382Right-handed 310
Helix 61
61
C
386 390Right-handed 310
Helix 62
62
C
399 408Right-handed alpha
Helix 63
63
C
416 425Right-handed alpha
Helix 64
64
C
425 432Right-handed alpha
Helix 65
65
C
471 475Right-handed 310
Helix 66
66
C
510 513Right-handed 310
Helix 67
67
D
39 41Right-handed 310
Helix 68
68
D
78 89Right-handed alpha
Helix 69
69
D
108 122Right-handed alpha
Helix 70
70
D
142 162Right-handed alpha
Helix 71
71
D
178 192Right-handed alpha
Helix 72
72
D
202 216Right-handed alpha
Helix 73
73
D
222 227Right-handed alpha
Helix 74
74
D
229 247Right-handed alpha
Helix 75
75
D
258 272Right-handed alpha
Helix 76
76
D
280 286Right-handed alpha
Helix 77
77
D
287 292Right-handed 310
Helix 78
78
D
307 311Right-handed 310
Helix 79
79
D
323 329Right-handed 310
Helix 80
80
D
339 349Right-handed alpha
Helix 81
81
D
372 375Right-handed 310
Helix 82
82
D
379 382Right-handed 310
Helix 83
83
D
386 390Right-handed 310
Helix 84
84
D
399 408Right-handed alpha
Helix 85
85
D
416 425Right-handed alpha
Helix 86
86
D
425 432Right-handed alpha
Helix 87
87
D
471 475Right-handed 310
Helix 88
88
D
510 513Right-handed 310
Helix 89
89
D
538 542Right-handed 310
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There are 14 sheets in PDB entry 2FVM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 48first strand
Strand 2
A
4 9parallel
Strand 3
A
23 27anti-parallel
Strand 4
A
30 35anti-parallel
Strand 5
C
30 35anti-parallel
Strand 6
C
23 27anti-parallel
Strand 7
C
4 9anti-parallel
Strand 8
C
43 48parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 21first strand
Strand 2
A
12 14anti-parallel
Strand 3
A
53 56parallel
Strand 4
A
450 452anti-parallel
Strand 5
A
494 497anti-parallel
Strand 6
A
500 504anti-parallel
Strand 7
A
507 508anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
91 99parallel
Strand 3
A
129 135parallel
Strand 4
A
165 169parallel
Strand 5
A
195 199parallel
Strand 6
A
251 253parallel
Strand 7
A
275 279parallel
Strand 8
A
354 355parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 378first strand
Strand 2
A
383 384anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 48first strand
Strand 2
B
4 9parallel
Strand 3
B
23 27anti-parallel
Strand 4
B
30 35anti-parallel
Strand 5
D
30 35anti-parallel
Strand 6
D
23 27anti-parallel
Strand 7
D
4 9anti-parallel
Strand 8
D
43 48parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 21first strand
Strand 2
B
12 14anti-parallel
Strand 3
B
53 56parallel
Strand 4
B
450 452anti-parallel
Strand 5
B
494 497anti-parallel
Strand 6
B
500 504anti-parallel
Strand 7
B
507 508anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 60first strand
Strand 2
B
91 99parallel
Strand 3
B
129 135parallel
Strand 4
B
165 169parallel
Strand 5
B
195 199parallel
Strand 6
B
251 253parallel
Strand 7
B
275 279parallel
Strand 8
B
354 355parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
377 378first strand
Strand 2
B
383 384anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
19 21first strand
Strand 2
C
12 14anti-parallel
Strand 3
C
53 56parallel
Strand 4
C
450 452anti-parallel
Strand 5
C
494 497anti-parallel
Strand 6
C
500 504anti-parallel
Strand 7
C
507 508anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 60first strand
Strand 2
C
91 99parallel
Strand 3
C
129 135parallel
Strand 4
C
165 169parallel
Strand 5
C
195 199parallel
Strand 6
C
251 253parallel
Strand 7
C
275 279parallel
Strand 8
C
354 355parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
377 378first strand
Strand 2
C
383 384anti-parallel
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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
19 21first strand
Strand 2
D
12 14anti-parallel
Strand 3
D
53 56parallel
Strand 4
D
450 452anti-parallel
Strand 5
D
494 497anti-parallel
Strand 6
D
500 504anti-parallel
Strand 7
D
507 508anti-parallel
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There are 8 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
58 60first strand
Strand 2
D
91 99parallel
Strand 3
D
129 135parallel
Strand 4
D
165 169parallel
Strand 5
D
195 199parallel
Strand 6
D
251 253parallel
Strand 7
D
275 279parallel
Strand 8
D
354 355parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
377 378first strand
Strand 2
D
383 384anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il