Analysis of interatomic Contacts of Structural Units in PDB entry:
2FVP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2FVP entry

There are 2 chains in PDB entry 2FVP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 T 1 A 16
A
 THR 24ARG 278
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 2FVP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 29Right-handed alpha
Helix 2
2
A
33 38Right-handed alpha
Helix 3
3
A
67 84Right-handed alpha
Helix 4
4
A
115 120Right-handed alpha
Helix 5
5
A
131 138Right-handed alpha
Helix 6
6
A
154 158Right-handed 310
Helix 7
7
A
164 169Right-handed 310
Helix 8
8
A
194 207Right-handed alpha
Helix 9
9
A
207 214Right-handed alpha
Helix 10
10
A
232 251Right-handed alpha
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There are 4 sheets in PDB entry 2FVP. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 90first strand
Strand 2
A
182 185anti-parallel
Strand 3
A
170 171anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 102first strand
Strand 2
A
109 113anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 222first strand
Strand 2
A
225 230anti-parallel
Strand 3
A
145 150anti-parallel
Strand 4
A
260 263anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 268first strand
Strand 2
A
271 274anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il