Analysis of interatomic Contacts of Structural Units in PDB entry:
2FY8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2FY8 entry

There are 8 chains in PDB entry 2FY8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 115	ALA 336
B	SER 115	ALA 336
C	SER 115	ALA 336
D	SER 115	ALA 336
E	SER 115	ALA 336
F	SER 115	ALA 336
G	SER 115	ALA 336
H	SER 115	ALA 336

There are 92 helices in PDB entry 2FY8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	124	133	Right-handed alpha
Helix 2	2	A	135	137	Right-handed 310
Helix 3	3	A	147	155	Right-handed alpha
Helix 4	4	A	166	173	Right-handed alpha
Helix 5	5	A	187	202	Right-handed alpha
Helix 6	6	A	213	215	Right-handed 310
Helix 7	7	A	216	225	Right-handed alpha
Helix 8	8	A	230	242	Right-handed alpha
Helix 9	9	A	246	257	Right-handed alpha
Helix 10	10	A	279	284	Right-handed alpha
Helix 11	11	A	284	290	Right-handed alpha
Helix 12	12	A	323	335	Right-handed alpha
Helix 13	13	B	124	133	Right-handed alpha
Helix 14	14	B	147	155	Right-handed alpha
Helix 15	15	B	166	173	Right-handed alpha
Helix 16	16	B	187	202	Right-handed alpha
Helix 17	17	B	213	215	Right-handed 310
Helix 18	18	B	216	224	Right-handed alpha
Helix 19	19	B	230	242	Right-handed alpha
Helix 20	20	B	246	256	Right-handed alpha
Helix 21	21	B	279	284	Right-handed alpha
Helix 22	22	B	284	290	Right-handed alpha
Helix 23	23	B	323	334	Right-handed alpha
Helix 24	24	C	124	134	Right-handed alpha
Helix 25	25	C	147	154	Right-handed alpha
Helix 26	26	C	166	173	Right-handed alpha
Helix 27	27	C	187	202	Right-handed alpha
Helix 28	28	C	213	215	Right-handed 310
Helix 29	29	C	216	224	Right-handed alpha
Helix 30	30	C	230	242	Right-handed alpha
Helix 31	31	C	246	254	Right-handed alpha
Helix 32	32	C	279	284	Right-handed alpha
Helix 33	33	C	284	290	Right-handed alpha
Helix 34	34	C	323	334	Right-handed alpha
Helix 35	35	D	124	133	Right-handed alpha
Helix 36	36	D	134	137	Right-handed 310
Helix 37	37	D	145	147	Right-handed 310
Helix 38	38	D	148	155	Right-handed alpha
Helix 39	39	D	166	173	Right-handed alpha
Helix 40	40	D	187	202	Right-handed alpha
Helix 41	41	D	213	215	Right-handed 310
Helix 42	42	D	216	224	Right-handed alpha
Helix 43	43	D	230	242	Right-handed alpha
Helix 44	44	D	246	256	Right-handed alpha
Helix 45	45	D	279	284	Right-handed alpha
Helix 46	46	D	284	290	Right-handed alpha
Helix 47	47	D	323	333	Right-handed alpha
Helix 48	48	E	124	133	Right-handed alpha
Helix 49	49	E	147	154	Right-handed alpha
Helix 50	50	E	166	173	Right-handed alpha
Helix 51	51	E	187	202	Right-handed alpha
Helix 52	52	E	213	215	Right-handed 310
Helix 53	53	E	216	224	Right-handed alpha
Helix 54	54	E	230	241	Right-handed alpha
Helix 55	55	E	246	257	Right-handed alpha
Helix 56	56	E	279	284	Right-handed alpha
Helix 57	57	E	284	290	Right-handed alpha
Helix 58	58	E	323	333	Right-handed alpha
Helix 59	59	F	124	133	Right-handed alpha
Helix 60	60	F	147	155	Right-handed alpha
Helix 61	61	F	166	173	Right-handed alpha
Helix 62	62	F	187	202	Right-handed alpha
Helix 63	63	F	213	215	Right-handed 310
Helix 64	64	F	216	224	Right-handed alpha
Helix 65	65	F	230	242	Right-handed alpha
Helix 66	66	F	246	256	Right-handed alpha
Helix 67	67	F	279	284	Right-handed alpha
Helix 68	68	F	284	290	Right-handed alpha
Helix 69	69	F	323	334	Right-handed alpha
Helix 70	70	G	124	134	Right-handed alpha
Helix 71	71	G	145	147	Right-handed 310
Helix 72	72	G	148	155	Right-handed alpha
Helix 73	73	G	166	173	Right-handed alpha
Helix 74	74	G	187	202	Right-handed alpha
Helix 75	75	G	213	215	Right-handed 310
Helix 76	76	G	216	224	Right-handed alpha
Helix 77	77	G	230	242	Right-handed alpha
Helix 78	78	G	246	256	Right-handed alpha
Helix 79	79	G	279	284	Right-handed alpha
Helix 80	80	G	284	290	Right-handed alpha
Helix 81	81	G	323	333	Right-handed alpha
Helix 82	82	H	124	134	Right-handed alpha
Helix 83	83	H	147	155	Right-handed alpha
Helix 84	84	H	166	173	Right-handed alpha
Helix 85	85	H	187	202	Right-handed alpha
Helix 86	86	H	213	215	Right-handed 310
Helix 87	87	H	216	224	Right-handed alpha
Helix 88	88	H	230	242	Right-handed alpha
Helix 89	89	H	246	257	Right-handed alpha
Helix 90	90	H	279	284	Right-handed alpha
Helix 91	91	H	284	290	Right-handed alpha
Helix 92	92	H	323	335	Right-handed alpha

There are 16 sheets in PDB entry 2FY8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	161	first strand
Strand 2	A	139	143	parallel
Strand 3	A	118	121	parallel
Strand 4	A	180	183	parallel
Strand 5	A	207	210	parallel
Strand 6	A	227	229	parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	263	268	first strand
Strand 2	A	317	322	anti-parallel
Strand 3	A	292	298	anti-parallel
Strand 4	A	301	304	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	161	first strand
Strand 2	B	139	143	parallel
Strand 3	B	118	121	parallel
Strand 4	B	180	183	parallel
Strand 5	B	206	210	parallel
Strand 6	B	227	229	parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	268	first strand
Strand 2	B	317	322	anti-parallel
Strand 3	B	292	298	anti-parallel
Strand 4	B	301	304	anti-parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	161	first strand
Strand 2	C	139	143	parallel
Strand 3	C	118	121	parallel
Strand 4	C	180	183	parallel
Strand 5	C	206	210	parallel
Strand 6	C	227	229	parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	263	268	first strand
Strand 2	C	317	322	anti-parallel
Strand 3	C	292	297	anti-parallel
Strand 4	C	302	304	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	161	first strand
Strand 2	D	139	143	parallel
Strand 3	D	118	121	parallel
Strand 4	D	180	183	parallel
Strand 5	D	207	210	parallel
Strand 6	D	227	229	parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	263	268	first strand
Strand 2	D	317	322	anti-parallel
Strand 3	D	292	298	anti-parallel
Strand 4	D	301	304	anti-parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	158	161	first strand
Strand 2	E	139	143	parallel
Strand 3	E	118	121	parallel
Strand 4	E	180	183	parallel
Strand 5	E	207	210	parallel
Strand 6	E	227	229	parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	263	268	first strand
Strand 2	E	317	322	anti-parallel
Strand 3	E	292	298	anti-parallel
Strand 4	E	301	304	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	158	161	first strand
Strand 2	F	139	143	parallel
Strand 3	F	118	121	parallel
Strand 4	F	180	183	parallel
Strand 5	F	206	210	parallel
Strand 6	F	227	229	parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	263	268	first strand
Strand 2	F	317	322	anti-parallel
Strand 3	F	292	297	anti-parallel
Strand 4	F	302	304	anti-parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	158	161	first strand
Strand 2	G	139	143	parallel
Strand 3	G	118	121	parallel
Strand 4	G	180	183	parallel
Strand 5	G	207	210	parallel
Strand 6	G	227	229	parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	263	268	first strand
Strand 2	G	317	322	anti-parallel
Strand 3	G	292	297	anti-parallel
Strand 4	G	302	304	anti-parallel

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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	158	161	first strand
Strand 2	H	139	143	parallel
Strand 3	H	118	121	parallel
Strand 4	H	180	183	parallel
Strand 5	H	206	210	parallel
Strand 6	H	227	229	parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	263	268	first strand
Strand 2	H	317	322	anti-parallel
Strand 3	H	292	298	anti-parallel
Strand 4	H	301	304	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2FY8

Analysis of interatomic Contacts of Structural Units in PDB entry:
2FY8