Analysis of interatomic Contacts of Structural Units in PDB entry:
2FYM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2FYM entry

There are 6 chains in PDB entry 2FYM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1ALA 431
B
 ALA 1PRO 15
C
 SER 1GLN 430
D
 SER 1GLN 430
E
 ALA 1PRO 15
F
 SER 1THR 42
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 79 helices in PDB entry 2FYM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
57 61Right-handed 310
Helix 2
2
A
63 72Right-handed alpha
Helix 3
3
A
72 79Right-handed alpha
Helix 4
4
A
85 98Right-handed alpha
Helix 5
5
A
106 125Right-handed alpha
Helix 6
6
A
128 137Right-handed alpha
Helix 7
7
A
156 159Right-handed 310
Helix 8
8
A
177 199Right-handed alpha
Helix 9
9
A
217 232Right-handed alpha
Helix 10
10
A
247 250Right-handed 310
Helix 11
11
A
260 263Right-handed 310
Helix 12
12
A
268 283Right-handed alpha
Helix 13
13
A
296 308Right-handed alpha
Helix 14
14
A
322 332Right-handed alpha
Helix 15
15
A
341 345Right-handed 310
Helix 16
16
A
347 361Right-handed alpha
Helix 17
17
A
377 386Right-handed alpha
Helix 18
18
A
398 416Right-handed alpha
Helix 19
19
A
417 419Right-handed 310
Helix 20
20
A
422 427Right-handed 310
Helix 21
21
B
2 7Right-handed alpha
Helix 22
22
C
57 61Right-handed 310
Helix 23
23
C
63 72Right-handed alpha
Helix 24
24
C
72 79Right-handed alpha
Helix 25
25
C
85 98Right-handed alpha
Helix 26
26
C
106 125Right-handed alpha
Helix 27
27
C
128 138Right-handed alpha
Helix 28
28
C
156 159Right-handed 310
Helix 29
29
C
177 199Right-handed alpha
Helix 30
30
C
217 232Right-handed alpha
Helix 31
31
C
247 250Right-handed 310
Helix 32
32
C
268 283Right-handed alpha
Helix 33
33
C
296 308Right-handed alpha
Helix 34
34
C
322 333Right-handed alpha
Helix 35
35
C
341 346Right-handed alpha
Helix 36
36
C
347 361Right-handed alpha
Helix 37
37
C
377 386Right-handed alpha
Helix 38
38
C
398 416Right-handed alpha
Helix 39
39
C
417 419Right-handed 310
Helix 40
40
C
422 427Right-handed 310
Helix 41
41
D
57 61Right-handed 310
Helix 42
42
D
63 72Right-handed alpha
Helix 43
43
D
72 79Right-handed alpha
Helix 44
44
D
85 98Right-handed alpha
Helix 45
45
D
106 125Right-handed alpha
Helix 46
46
D
128 137Right-handed alpha
Helix 47
47
D
156 159Right-handed 310
Helix 48
48
D
177 199Right-handed alpha
Helix 49
49
D
217 232Right-handed alpha
Helix 50
50
D
247 250Right-handed 310
Helix 51
51
D
268 283Right-handed alpha
Helix 52
52
D
296 308Right-handed alpha
Helix 53
53
D
322 332Right-handed alpha
Helix 54
54
D
341 346Right-handed alpha
Helix 55
55
D
347 362Right-handed alpha
Helix 56
56
D
377 386Right-handed alpha
Helix 57
57
D
398 416Right-handed alpha
Helix 58
58
D
417 419Right-handed 310
Helix 59
59
D
422 427Right-handed 310
Helix 60
60
E
2 7Right-handed alpha
Helix 61
61
F
57 61Right-handed 310
Helix 62
62
F
63 72Right-handed alpha
Helix 63
63
F
72 79Right-handed alpha
Helix 64
64
F
85 98Right-handed alpha
Helix 65
65
F
106 125Right-handed alpha
Helix 66
66
F
128 137Right-handed alpha
Helix 67
67
F
156 159Right-handed 310
Helix 68
68
F
177 199Right-handed alpha
Helix 69
69
F
217 232Right-handed alpha
Helix 70
70
F
247 250Right-handed 310
Helix 71
71
F
268 283Right-handed alpha
Helix 72
72
F
296 308Right-handed alpha
Helix 73
73
F
322 332Right-handed alpha
Helix 74
74
F
341 346Right-handed alpha
Helix 75
75
F
347 361Right-handed alpha
Helix 76
76
F
377 386Right-handed alpha
Helix 77
77
F
398 416Right-handed alpha
Helix 78
78
F
417 419Right-handed 310
Helix 79
79
F
422 427Right-handed 310
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There are 12 sheets in PDB entry 2FYM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 12first strand
Strand 2
A
18 26anti-parallel
Strand 3
A
31 35anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
389 392parallel
Strand 3
A
364 368parallel
Strand 4
A
337 340parallel
Strand 5
A
312 315parallel
Strand 6
A
285 289parallel
Strand 7
A
241 245parallel
Strand 8
A
167 171anti-parallel
Strand 9
A
150 154anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 253first strand
Strand 2
A
256 258anti-parallel
Strand 3
A
266 267anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 12first strand
Strand 2
C
18 26anti-parallel
Strand 3
C
31 35anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
147 148first strand
Strand 2
C
389 392parallel
Strand 3
C
364 368parallel
Strand 4
C
337 340parallel
Strand 5
C
312 315parallel
Strand 6
C
285 289parallel
Strand 7
C
241 245parallel
Strand 8
C
167 171anti-parallel
Strand 9
C
150 154anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
252 253first strand
Strand 2
C
256 257anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 12first strand
Strand 2
D
18 26anti-parallel
Strand 3
D
31 35anti-parallel
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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
147 148first strand
Strand 2
D
389 392parallel
Strand 3
D
364 368parallel
Strand 4
D
337 340parallel
Strand 5
D
312 315parallel
Strand 6
D
285 289parallel
Strand 7
D
241 245parallel
Strand 8
D
167 171anti-parallel
Strand 9
D
150 154anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
252 253first strand
Strand 2
D
256 259anti-parallel
Strand 3
D
265 267anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
3 12first strand
Strand 2
F
18 26anti-parallel
Strand 3
F
31 35anti-parallel
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There are 9 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
147 148first strand
Strand 2
F
389 392parallel
Strand 3
F
364 368parallel
Strand 4
F
337 340parallel
Strand 5
F
312 315parallel
Strand 6
F
285 289parallel
Strand 7
F
241 245parallel
Strand 8
F
167 171anti-parallel
Strand 9
F
150 154anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
252 253first strand
Strand 2
F
256 259anti-parallel
Strand 3
F
265 267anti-parallel
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