Analysis of interatomic Contacts of Structural Units in PDB entry:
2FYW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2FYW entry

There are 3 chains in PDB entry 2FYW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -1ILE 265
B
 ASN -1ILE 265
C
 ALA 0ILE 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 2FYW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 14Right-handed alpha
Helix 2
2
A
15 19Right-handed 310
Helix 3
3
A
46 56Right-handed alpha
Helix 4
4
A
79 91Right-handed alpha
Helix 5
5
A
99 105Right-handed alpha
Helix 6
6
A
108 118Right-handed alpha
Helix 7
7
A
145 156Right-handed alpha
Helix 8
8
A
169 172Right-handed 310
Helix 9
9
A
185 187Right-handed 310
Helix 10
10
A
188 195Right-handed alpha
Helix 11
11
A
206 216Right-handed alpha
Helix 12
12
A
224 228Right-handed 310
Helix 13
13
A
229 247Right-handed alpha
Helix 14
14
B
3 14Right-handed alpha
Helix 15
15
B
15 19Right-handed 310
Helix 16
16
B
46 56Right-handed alpha
Helix 17
17
B
79 91Right-handed alpha
Helix 18
18
B
99 105Right-handed alpha
Helix 19
19
B
108 118Right-handed alpha
Helix 20
20
B
145 156Right-handed alpha
Helix 21
21
B
167 172Right-handed 310
Helix 22
22
B
188 195Right-handed alpha
Helix 23
23
B
206 216Right-handed alpha
Helix 24
24
B
224 228Right-handed 310
Helix 25
25
B
229 247Right-handed alpha
Helix 26
26
C
2 14Right-handed alpha
Helix 27
27
C
15 19Right-handed 310
Helix 28
28
C
46 57Right-handed alpha
Helix 29
29
C
79 91Right-handed alpha
Helix 30
30
C
100 105Right-handed alpha
Helix 31
31
C
108 118Right-handed alpha
Helix 32
32
C
145 157Right-handed alpha
Helix 33
33
C
167 172Right-handed 310
Helix 34
34
C
185 187Right-handed 310
Helix 35
35
C
188 195Right-handed alpha
Helix 36
36
C
206 216Right-handed alpha
Helix 37
37
C
225 228Right-handed 310
Helix 38
38
C
229 247Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 2FYW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 29first strand
Strand 2
A
94 97anti-parallel
Strand 3
A
60 63parallel
Strand 4
A
38 42parallel
Strand 5
A
251 254parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 129first strand
Strand 2
A
132 144anti-parallel
Strand 3
A
174 181anti-parallel
Strand 4
A
199 202parallel
Strand 5
A
219 222parallel
Strand 6
A
162 164anti-parallel
Strand 7
B
262 264anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 264first strand
Strand 2
B
162 164anti-parallel
Strand 3
B
219 222anti-parallel
Strand 4
B
199 203parallel
Strand 5
B
174 184parallel
Strand 6
B
136 144anti-parallel
Strand 7
B
120 123anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1 2first strand
Strand 2
B
35 36anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 29first strand
Strand 2
B
94 98anti-parallel
Strand 3
B
60 63parallel
Strand 4
B
38 42parallel
Strand 5
B
251 254parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 129first strand
Strand 2
B
132 134anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
26 29first strand
Strand 2
C
94 97anti-parallel
Strand 3
C
60 63parallel
Strand 4
C
38 42parallel
Strand 5
C
251 254parallel
Back to list of sheets
Back to top of page

There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
120 129first strand
Strand 2
C
132 144anti-parallel
Strand 3
C
174 181anti-parallel
Strand 4
C
199 202parallel
Strand 5
C
219 222parallel
Strand 6
C
162 164anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il