Analysis of interatomic Contacts of Structural Units in PDB entry:
2G08


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2G08 entry

There are 2 chains in PDB entry 2G08 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 7LEU 297
B
 ALA 7LEU 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 2G08. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 18Right-handed 310
Helix 2
2
A
25 40Right-handed alpha
Helix 3
3
A
66 74Right-handed alpha
Helix 4
4
A
78 97Right-handed alpha
Helix 5
5
A
102 125Right-handed alpha
Helix 6
6
A
127 129Right-handed 310
Helix 7
7
A
130 137Right-handed alpha
Helix 8
8
A
145 156Right-handed alpha
Helix 9
9
A
168 178Right-handed alpha
Helix 10
10
A
212 219Right-handed alpha
Helix 11
11
A
220 227Right-handed alpha
Helix 12
12
A
239 247Right-handed 310
Helix 13
13
A
264 276Right-handed alpha
Helix 14
14
A
286 297Right-handed alpha
Helix 15
15
B
9 17Right-handed 310
Helix 16
16
B
25 40Right-handed alpha
Helix 17
17
B
66 74Right-handed alpha
Helix 18
18
B
78 97Right-handed alpha
Helix 19
19
B
102 125Right-handed alpha
Helix 20
20
B
130 137Right-handed alpha
Helix 21
21
B
145 156Right-handed alpha
Helix 22
22
B
168 178Right-handed alpha
Helix 23
23
B
212 219Right-handed alpha
Helix 24
24
B
220 226Right-handed alpha
Helix 25
25
B
239 247Right-handed 310
Helix 26
26
B
264 276Right-handed alpha
Helix 27
27
B
286 297Right-handed alpha
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There are 6 sheets in PDB entry 2G08. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 22first strand
Strand 2
A
278 281anti-parallel
Strand 3
A
254 261parallel
Strand 4
A
232 237parallel
Strand 5
A
44 48parallel
Strand 6
A
160 167parallel
Strand 7
A
185 190parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 59first strand
Strand 2
A
62 63anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 194first strand
Strand 2
A
200 203anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 22first strand
Strand 2
B
278 281anti-parallel
Strand 3
B
254 261parallel
Strand 4
B
232 237parallel
Strand 5
B
44 48parallel
Strand 6
B
160 167parallel
Strand 7
B
185 190parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 59first strand
Strand 2
B
62 63anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 194first strand
Strand 2
B
200 203anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il