Analysis of interatomic Contacts of Structural Units in PDB entry:
2G39


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2G39 entry

There are 2 chains in PDB entry 2G39 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3GLY 497
B
 ASP 4GLY 497
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 2G39. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 15Right-handed 310
Helix 2
2
A
17 23Right-handed alpha
Helix 3
3
A
43 56Right-handed alpha
Helix 4
4
A
71 79Right-handed alpha
Helix 5
5
A
91 100Right-handed alpha
Helix 6
6
A
112 119Right-handed alpha
Helix 7
7
A
149 157Right-handed alpha
Helix 8
8
A
169 173Right-handed 310
Helix 9
9
A
207 209Right-handed 310
Helix 10
10
A
230 250Right-handed alpha
Helix 11
11
A
265 274Right-handed alpha
Helix 12
12
A
275 277Right-handed 310
Helix 13
13
A
291 300Right-handed alpha
Helix 14
14
A
314 324Right-handed alpha
Helix 15
15
A
325 330Right-handed 310
Helix 16
16
A
336 341Right-handed alpha
Helix 17
17
A
342 350Right-handed alpha
Helix 18
18
A
372 374Right-handed 310
Helix 19
19
A
382 390Right-handed alpha
Helix 20
20
A
402 405Right-handed 310
Helix 21
21
A
419 423Right-handed 310
Helix 22
22
A
439 451Right-handed alpha
Helix 23
23
A
456 470Right-handed alpha
Helix 24
24
A
482 492Right-handed alpha
Helix 25
25
B
8 15Right-handed 310
Helix 26
26
B
17 23Right-handed alpha
Helix 27
27
B
43 54Right-handed alpha
Helix 28
28
B
71 79Right-handed alpha
Helix 29
29
B
91 100Right-handed alpha
Helix 30
30
B
112 119Right-handed alpha
Helix 31
31
B
149 157Right-handed alpha
Helix 32
32
B
169 173Right-handed 310
Helix 33
33
B
207 209Right-handed 310
Helix 34
34
B
230 250Right-handed alpha
Helix 35
35
B
265 275Right-handed alpha
Helix 36
36
B
291 300Right-handed alpha
Helix 37
37
B
314 324Right-handed alpha
Helix 38
38
B
325 330Right-handed 310
Helix 39
39
B
336 341Right-handed alpha
Helix 40
40
B
342 350Right-handed alpha
Helix 41
41
B
372 374Right-handed 310
Helix 42
42
B
382 390Right-handed alpha
Helix 43
43
B
402 405Right-handed 310
Helix 44
44
B
419 423Right-handed 310
Helix 45
45
B
439 451Right-handed alpha
Helix 46
46
B
453 470Right-handed alpha
Helix 47
47
B
482 492Right-handed alpha
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There are 16 sheets in PDB entry 2G39. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 105first strand
Strand 2
A
82 86parallel
Strand 3
A
60 63parallel
Strand 4
A
30 33parallel
Strand 5
A
127 132parallel
Strand 6
A
159 165parallel
Strand 7
A
211 217parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
141 142anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 262first strand
Strand 2
A
352 356parallel
Strand 3
A
392 396parallel
Strand 4
A
425 428parallel
Strand 5
A
431 434anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 286first strand
Strand 2
A
303 308parallel
Strand 3
A
332 334parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 290first strand
Strand 2
A
310 311parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 367first strand
Strand 2
A
359 361anti-parallel
Strand 3
A
409 410parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 371first strand
Strand 2
A
375 376anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 401first strand
Strand 2
A
406 407anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 105first strand
Strand 2
B
82 86parallel
Strand 3
B
60 63parallel
Strand 4
B
30 33parallel
Strand 5
B
127 135parallel
Strand 6
B
141 143anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 105first strand
Strand 2
B
82 86parallel
Strand 3
B
60 63parallel
Strand 4
B
30 33parallel
Strand 5
B
127 135parallel
Strand 6
B
159 165parallel
Strand 7
B
211 217parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 262first strand
Strand 2
B
352 356parallel
Strand 3
B
392 396parallel
Strand 4
B
425 428parallel
Strand 5
B
431 434anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 286first strand
Strand 2
B
303 308parallel
Strand 3
B
332 334parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
289 290first strand
Strand 2
B
310 311parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
366 367first strand
Strand 2
B
359 361anti-parallel
Strand 3
B
409 410parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
370 371first strand
Strand 2
B
375 376anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
400 401first strand
Strand 2
B
406 407anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il