Analysis of interatomic Contacts of Structural Units in PDB entry:
2G5D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2G5D entry

There is 1 chain in PDB entry 2G5D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 40PRO 441
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 2G5D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
65 69Right-handed 310
Helix 2
2
A
76 92Right-handed alpha
Helix 3
3
A
97 106Right-handed alpha
Helix 4
4
A
110 121Right-handed alpha
Helix 5
5
A
231 237Right-handed alpha
Helix 6
6
A
252 263Right-handed alpha
Helix 7
7
A
289 296Right-handed alpha
Helix 8
8
A
306 317Right-handed alpha
Helix 9
9
A
320 326Right-handed alpha
Helix 10
10
A
411 421Right-handed alpha
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There are 3 sheets in PDB entry 2G5D. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
59 63anti-parallel
Strand 3
A
122 129anti-parallel
Strand 4
A
422 432anti-parallel
Strand 5
A
371 377anti-parallel
Strand 6
A
384 394anti-parallel
Strand 7
A
358 361parallel
Strand 8
A
403 410anti-parallel
Strand 9
A
135 142parallel
Strand 10
A
422 432anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 160first strand
Strand 2
A
246 250anti-parallel
Strand 3
A
144 148anti-parallel
Strand 4
A
265 268parallel
Strand 5
A
274 282anti-parallel
Strand 6
A
332 336anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 170first strand
Strand 2
A
216 222anti-parallel
Strand 3
A
225 228anti-parallel
Strand 4
A
201 203parallel
Strand 5
A
182 184anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il