Analysis of interatomic Contacts of Structural Units in PDB entry:
2G88


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2G88 entry

There is 1 chain in PDB entry 2G88 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 349
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2G88. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 24Right-handed alpha
Helix 2
2
A
46 53Right-handed alpha
Helix 3
3
A
73 88Right-handed alpha
Helix 4
4
A
102 108Right-handed alpha
Helix 5
5
A
112 116Right-handed 310
Helix 6
6
A
123 128Right-handed alpha
Helix 7
7
A
128 136Right-handed alpha
Helix 8
8
A
167 186Right-handed alpha
Helix 9
9
A
213 221Right-handed alpha
Helix 10
10
A
271 282Right-handed alpha
Helix 11
11
A
303 312Right-handed alpha
Helix 12
12
A
314 327Right-handed alpha
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There are 2 sheets in PDB entry 2G88. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 119first strand
Strand 2
A
91 95parallel
Strand 3
A
140 145parallel
Strand 4
A
190 195parallel
Strand 5
A
63 67parallel
Strand 6
A
223 231parallel
Strand 7
A
243 251anti-parallel
Strand 8
A
258 265anti-parallel
Strand 9
A
269 270anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 295first strand
Strand 2
A
298 299anti-parallel
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