Analysis of interatomic Contacts of Structural Units in PDB entry:
2G8S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2G8S entry

There are 2 chains in PDB entry 2G8S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3ARG 350
B
 THR 4ARG 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 2G8S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
73 78Right-handed alpha
Helix 2
2
A
149 155Right-handed 310
Helix 3
3
A
281 285Right-handed 310
Helix 4
4
A
315 319Right-handed 310
Helix 5
5
B
73 78Right-handed alpha
Helix 6
6
B
149 155Right-handed 310
Helix 7
7
B
281 285Right-handed 310
Helix 8
8
B
315 319Right-handed 310
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There are 12 sheets in PDB entry 2G8S. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 14first strand
Strand 2
A
342 349anti-parallel
Strand 3
A
333 337anti-parallel
Strand 4
A
322 327anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 22first strand
Strand 2
A
29 33anti-parallel
Strand 3
A
37 42anti-parallel
Strand 4
A
46 47anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 70first strand
Strand 2
A
79 87anti-parallel
Strand 3
A
93 102anti-parallel
Strand 4
A
109 117anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 134first strand
Strand 2
A
139 144anti-parallel
Strand 3
A
162 167anti-parallel
Strand 4
A
188 191anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 202first strand
Strand 2
A
207 213anti-parallel
Strand 3
A
219 222anti-parallel
Strand 4
A
262 264anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 276first strand
Strand 2
A
287 292anti-parallel
Strand 3
A
297 304anti-parallel
Strand 4
A
307 314anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 14first strand
Strand 2
B
342 349anti-parallel
Strand 3
B
333 337anti-parallel
Strand 4
B
322 327anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 22first strand
Strand 2
B
29 33anti-parallel
Strand 3
B
37 42anti-parallel
Strand 4
B
46 47anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 70first strand
Strand 2
B
79 87anti-parallel
Strand 3
B
93 102anti-parallel
Strand 4
B
109 117anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 134first strand
Strand 2
B
139 144anti-parallel
Strand 3
B
162 167anti-parallel
Strand 4
B
188 191anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 202first strand
Strand 2
B
207 213anti-parallel
Strand 3
B
219 222anti-parallel
Strand 4
B
262 264anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
270 276first strand
Strand 2
B
287 292anti-parallel
Strand 3
B
297 304anti-parallel
Strand 4
B
307 314anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il